RNA id: TU50116


Basic Information

Item Value
RNA id TU50116
length 486
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G37186
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17026457 ~ 17026942 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ccgtCAGTCTTCCCCTTACCCCTGTGATCAGAGCCTGGGATGTGCAGTGGttggaagagaaaaagaaatgcaGAATTTGCATGTAACCAAGGCAATTCCCACAGGAGGGGGAGCCATTTGGTTATGTGCAATATGTCAAGCTCGGTTAGAGTAACACGAAGCGCTGCtgctgaaagggttaaagtgtgCTGGACACAGTGAGACAGCAGCTAAATAGGAAGGAAAATCTGCAGATGAGATGTCAGATTCAAAGCACTCTATTAAGTGAAGGAGGTTAATAAAGGATGAGAGGATTTGActctgcagtttctgaggcCCTCAGGGTGATGTGGGTTCATACTGGACTCAGCAAAAATACCCTCCAAAAccacagagagatagacagctTCCAGAACAGGCAGAGGCTAAAAGAGATAGGTTAGGAGACATGAGTCGTGGAGGAAGACAGCAGATGACCCAGACGCTTAGAAAAAAGAAACGCGATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50119 lncRNA downstream 5529 17020721 ~ 17020928 (-) True G37189
TU50115 lncRNA downstream 10559 17000372 ~ 17015898 (-) True G37185
TU49790 lncRNA downstream 112654 16913570 ~ 16913803 (-) False LOC103043629
TU49748 lncRNA downstream 274289 16742832 ~ 16752168 (-) True G36922
TU49694 lncRNA downstream 381892 16638592 ~ 16644565 (-) True G36882
TU50121 lncRNA upstream 9614 17036556 ~ 17040941 (-) True G37191
TU50126 lncRNA upstream 20665 17047607 ~ 17054418 (-) False crym
TU50140 lncRNA upstream 64800 17091742 ~ 17092051 (-) True G37206
TU50155 lncRNA upstream 81770 17108712 ~ 17110709 (-) True G37213
TU50158 lncRNA upstream 85560 17112502 ~ 17116008 (-) True G37215
XM_022669417.1 mRNA downstream 111172 16913576 ~ 16915285 (-) True LOC103043629
XM_007251305.3 mRNA downstream 132940 16875022 ~ 16893517 (-) True LOC103037732
XM_022669209.1 mRNA downstream 160368 16816228 ~ 16866089 (-) False exoc6
XM_022669205.1 mRNA downstream 163056 16798517 ~ 16863401 (-) False exoc6
XM_015606335.2 mRNA upstream 26587 17053529 ~ 17062947 (-) False crym
XM_007251291.3 mRNA upstream 26587 17053529 ~ 17062945 (-) True crym
XM_007251285.3 mRNA upstream 38461 17065403 ~ 17067982 (-) True LOC103032763
XM_007251319.2 mRNA upstream 121599 17148541 ~ 17169878 (-) True LOC103043322
XM_007251275.3 mRNA upstream 152405 17179347 ~ 17184427 (-) True LOC103030148
TU50113 other downstream 7539 17016128 ~ 17018918 (-) True G37183
TU49443 other downstream 1185972 15837105 ~ 15840485 (-) False LOC103023526
TU49415 other downstream 1256928 15755613 ~ 15769529 (-) False G36677
TU49409 other downstream 1256966 15755613 ~ 15769491 (-) False G36677
trnal-uag_1 other upstream 68303 17095245 ~ 17095326 (-) True trnal-uag_1
TU50180 other upstream 152436 17179378 ~ 17184405 (-) False LOC103030148
TU50205 other upstream 347242 17374184 ~ 17381597 (-) True LOC103024241
TU50265 other upstream 406030 17432972 ~ 17466024 (-) True G37290
TU50267 other upstream 406030 17432972 ~ 17463317 (-) False G37290

Expression Profile