RNA id: XM_022669224.1


Basic Information

Item Value
RNA id XM_022669224.1
length 2657
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC103024241
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17374184 ~ 17381733 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGGTTAtatggctagctagctaaccgaGCTTAGATAGCTAACTGTGTAGCATGGTTAACACCCGGAGCGGTgtttatgtgtatttgtgtgttggTGGAGATTTACAGAAGGCTATGTGGCTATGTGTTTAGGACTGGGTGCTTTTAATAATTGATGTTAGCTAGTGAGCTGTGCCTGTGCTTGgtctacgtgtgtgtgtgtgtgtgtatatgtctgtTTACCACGAGAACAGGATGACATGACACTTTACTCGCTAGCTAGCAAACTAGGCGCCAGGCAAACAAAAACGCAACAATGACATCAGACGCCCGAGCCAGCAAAGCCCTCAAGGTGAAGAGGGAGTGTGGAGAAAATGTTCCTGTGCTTTCAGACAGTGAGCTCATGTCTTTGTCGGTGCGCGAGCTGAACCTGCACCTGCGCGGTTTATCGAGAGAGGAGATCCAGaagctgaaacagaggcggcgcACGCTCAAGAACCGTGGCTACGCTGCGAGCTGCAGGGTGAAGCGCGTATCTCAGCGAGAAGCTCTGGAACAGCAGAAGAAGGAGCTTCAGCGCGAGGTGGAGCGGCTGGGCGCTGAGAACGCGGGCATGCGGCGGGAGCTGGAGGGGCTTGGTGCTCGGTTGGCCGCCCTGCAACGCTTCGCCCGAGGCTTGGAGGCCGGAGGAGGAAGCCTTCTGGCCACAGCCCCTCGCCTTAACACCGCCTCAGTCATCACCATAGTGAAGAGCCCACAGCagggccacgcccacagagaaCAGGAAGCGTCCTAGGGATGGCTGTTATTAGCAACAGGTGCACAAAATCACATGCagctacactcttaaaaataaaggtgccatGGGtgggtgagagagtgagtgtgaaggGCCTTCACATCTTCACCATGGTGTAAAATGTTCCTATCAAGGAGAGGTTTTATCCAAGCCAAGAAGCACATggaaacctttatttttaagagtgtacagAGAGGTACACAACACAGACCAGATACAATAACTGGACCATTTAAGCTGAACTGAATAACGGACTGACTGGCAAGCATTTCGATTTAGAAATGTCTTAAAAGATGTTTTCCTGAAGTCAGTGGAACTGATGATGAGGTATGTTTTCAGATTGGTCATTGGCTCAAGCTCTTACATGTATACAGGTCTAACAGTATACCTAcctagggttgggcggtatttAGAAGATAAAGCTTCAAACCTGCGCACACAAGCGAGTAAATGATCTTAGGAGTAAGGCACATCCTGCAGACGCATGTGTTTTTAAGTTTAGTGGCTTTTCCTTTGATTTGAACAGAGTACATTGCTAAACGTACAGGAGCTCTGTCTTAAATTCGAGTGCGCATCCATCCTGTGGCCATATTAAATGCACATGAATGAATAAGCTATTTTGGCCTGTATTAGTTAGTTTACACAGAGCATAAATCTGGCATGTCAGTCTTTAGAGATACCTTTAAAATATGGTATTACTGTTGTACCGTCCAACCCTGTACCAATCATTACAGTTCATACATACATTGTGAGCTGGTGAGTTCCACTTTCTTGTAAATGTCCCAGACTGGCTTCTGTCCACTGCCTCTCTTGTGAGGcacttaatttgtttgttttttgtttgtaatttcaACATTTAGAATGACCATTTCGTCTCCATGAGCTGATGTTAAACTCATGTTTCTATGGTCAGCCTATAACGTTGACTTTAACCAGTATAAAAAAAGATGTGAGTAGGGTGTTGTTGGTCAGTTTACATGCTATTTAGCTCAAAGATGTCCTAATCACACCATTAATATTATATGCTTTACTTTTTGGCCTTACATGATGATACTAGTCACAACTGTACAGGTCTTTACTGGAGTAACGACTGAACTCGACTTTAATATCTCTTGACTACCAACTTTCCTATAAGTTGGCAAACACTGCTGGAATATATTGATAACTACCATTAGTCACGGAACTGGGCTCGGTTTACCCAAAGCATCTTGGCACAAGGATAGACCCTAACTCCTAAATGGCAGAGCAAGCATCATCACACTGTGATCCACTTTATCTACCAGTTAAGGCCATCTTAATACGGAGATGCTGTTATTGGGAAACTGGGCCCAGACCAGTAGAATGCCACGTCAATGCAAGCTTAAACATTCctgtataataattatttttaatacttaaacAAAAGACAAATAATCTGCAAAATCGAGAGCTGTTTTATCTCTATTTAAGATGAAGACCTTTAAGCTAAGAAGAGCTGTGATTTTAAGTCCAAATACTGCTTATGTGCTTATGTATGACTAGCTTAGGGATGTTGCCGTGTCTGAATTAATGTAATgggtatgatttttttttttttggtttcgtATGTAgggtttactgttttaatgaggaATTTAGCTATGTTTAGAGATATGGCTCTATTACTGTAACttgattcagtgtgtgtgtgtgtgtgtgaaggtcaTATTTGTGTTATTACAGTATAGTGGCTTGTCAGTAgtggtatttttttgtatttaaaagtaGAATGATAATTATTGATATTTATAACAACAAAATACATCTGGACGCTTAAACAGTATCACATGAGAGGAAGATGTGGGAAAGAAAGGGATGAGGGGAGAAAGAGGGTAAGAGATCGATTGAAAAGTTAAGAAAA

Function

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50220 lncRNA downstream 37421 17335591 ~ 17337322 (-) True G37254
TU50195 lncRNA downstream 47147 17241176 ~ 17327596 (-) True G37237
TU50196 lncRNA downstream 127290 17241720 ~ 17247453 (-) True G37238
TU50160 lncRNA downstream 252542 17121775 ~ 17122201 (-) True G37217
TU50158 lncRNA downstream 258735 17112502 ~ 17116008 (-) True G37215
TU50244 lncRNA upstream 4426 17385841 ~ 17390421 (-) True G37274
TU50286 lncRNA upstream 92495 17473910 ~ 17476836 (-) True LOC103025140
TU50288 lncRNA upstream 107470 17488885 ~ 17494415 (-) True G37298
TU50290 lncRNA upstream 107470 17488885 ~ 17494415 (-) False G37298
TU50307 lncRNA upstream 172157 17553572 ~ 17555922 (-) True G37309
XM_007251259.3 mRNA downstream 48828 17319206 ~ 17325915 (-) False LOC103025298
XM_007251258.3 mRNA downstream 48999 17319206 ~ 17325744 (-) False LOC103025298
XM_022669222.1 mRNA downstream 49153 17319206 ~ 17325590 (-) False LOC103025298
XM_007251256.3 mRNA downstream 49386 17319206 ~ 17325357 (-) True LOC103025298
XM_022669221.1 mRNA downstream 50655 17319206 ~ 17324088 (-) False LOC103025298
XM_015606342.2 mRNA upstream 33660 17415075 ~ 17421795 (-) True rsl1d1
XM_022669439.1 mRNA upstream 49591 17431006 ~ 17438492 (-) True LOC111192420
XM_022669228.1 mRNA upstream 61226 17442641 ~ 17466671 (-) False LOC111192380
XM_022669227.1 mRNA upstream 61226 17442641 ~ 17465758 (-) True LOC111192380
XM_007239750.2 mRNA upstream 93169 17474584 ~ 17476878 (-) False LOC103025140
TU50180 other downstream 190338 17179378 ~ 17184405 (-) False LOC103030148
trnal-uag_1 other downstream 279417 17095245 ~ 17095326 (-) True trnal-uag_1
TU50113 other downstream 355825 17016128 ~ 17018918 (-) True G37183
TU49443 other downstream 1534258 15837105 ~ 15840485 (-) False LOC103023526
XR_002649883.1 other downstream 1615880 15758390 ~ 15758863 (-) True LOC111192378
TU50265 other upstream 51557 17432972 ~ 17466024 (-) True G37290
TU50267 other upstream 51557 17432972 ~ 17463317 (-) False G37290
TU50318 other upstream 202635 17584050 ~ 17653785 (-) False LOC103025753
XR_002649888.1 other upstream 311082 17692497 ~ 17705023 (-) False cntd1
XR_002649887.1 other upstream 311083 17692498 ~ 17705023 (-) False cntd1

Expression Profile