RNA id: TU50220


Basic Information

Item Value
RNA id TU50220
length 1407
lncRNA type inter_gene
GC content 0.47
exon number 4
gene id G37254
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17335591 ~ 17337322 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTGTTGAGGGGGCTGTCTGAGGCACTGTAGGGCCAGGCACCAGGTGAAGGCAGCAAGGTGTTTAGGGAGGGGGTTGATTCTGTGTTATCTCGAAGCAACGGGTGCTCAGTATCATTGATGCTCGACACGGTCGATGAGCTCAGTATACCTCCAGGGGTCATGTAGGGGTCTGATTCTGGATCAACACTCGGAATTCCTTTCCAAGGCACCCCTGGCTGGAATTCTGGAGGCCATGTGGATGTGCCCGTTTTGTTTCCCATTTTGTTCCCAGGGGTTCTCTGCCAGCTGTCCGAAGGCACACCCAAACTATCCACCCCCAGCATCTCATACTGGGAGTATGGCGAGCTACCTCTCTTCACAGGAGCAGCAATGGGGcctTTTTGTGAATTGCGCTGTCTGGAGAGGAGGGAGCTGGTGAGTGACCTTCCATCATCCATTTAAACCGGGATTGCTGTCCCCCTCCTTCTTTTAAACCAGAAGAAGCACCAACCATTGAACCCAACTCAAGGCCAGAACCAAACCCTGATGGTTTcggaaacagaacagaacaggctAATTAGCAACAAAGAACTGACATTTGGTTGAGACAGACAGCAAAGGTTAATGTAAGCATACAGCAATATGGGAATTCTTGGTCTGCACTGGCCAGTGTCTGTTTTGCCTTGCaaatacacagacatgccacTGACATGATGAGTCAAGAGACAGGACTTTGTCTCCCATGAGTTTTGCCATGACCCAGAGAAGCTAAATACCACTGACCTGCAGAGCACGATTGTCAAAATGAATGTTGATGTGATGTGGATTTCTGCCAgatttgcttgtctgtttgcaaaGACAATTCAATCCAGACGCTGATaatcatgatcattaccacccactgtgctgtccactgtgcaTGGTAATGCATTCTATGGCACATTCCAGAAACAGGTGCATGGTGGAATGAGAAACGTTGAATGGCCACTAgagtttacatttacatttaaggtatttagcagacgccctttatccagagcgacttacaacagtgctttgtTGTTTAATTCAAAATATCTATAGCTAGTATGTAGATTaggataaaaaaacacaaaaaagcttGATGATGTTTAGAACCCAGTGGacacccagtggaagttcattccaccaacttggtttgttttctgttggtcTTGAGGGATGGTGACTCAaaccgagccgtactggaatcGTTTGGAAACTGGAAGAGTTtttggtacagatctggctttgaccattgccattAATTAGGAAGGAGCTGgtctgtttttggatttgtagggcagcgtcagggttttgaatttgatgcgggcggcaacaggaagccagtggaggaaGGAACGCAgaaaaggagtcacatgactgaacttcggaagattgaagatgAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50195 lncRNA downstream 7995 17241176 ~ 17327596 (-) True G37237
TU50196 lncRNA downstream 88138 17241720 ~ 17247453 (-) True G37238
TU50160 lncRNA downstream 213390 17121775 ~ 17122201 (-) True G37217
TU50158 lncRNA downstream 219583 17112502 ~ 17116008 (-) True G37215
TU50155 lncRNA downstream 224882 17108712 ~ 17110709 (-) True G37213
TU50244 lncRNA upstream 48519 17385841 ~ 17390421 (-) True G37274
TU50286 lncRNA upstream 136588 17473910 ~ 17476836 (-) True LOC103025140
TU50288 lncRNA upstream 151563 17488885 ~ 17494415 (-) True G37298
TU50290 lncRNA upstream 151563 17488885 ~ 17494415 (-) False G37298
TU50307 lncRNA upstream 216250 17553572 ~ 17555922 (-) True G37309
XM_007251259.3 mRNA downstream 9676 17319206 ~ 17325915 (-) False LOC103025298
XM_007251258.3 mRNA downstream 9847 17319206 ~ 17325744 (-) False LOC103025298
XM_022669222.1 mRNA downstream 10001 17319206 ~ 17325590 (-) False LOC103025298
XM_007251256.3 mRNA downstream 10234 17319206 ~ 17325357 (-) True LOC103025298
XM_022669221.1 mRNA downstream 11503 17319206 ~ 17324088 (-) False LOC103025298
XM_007251252.3 mRNA upstream 37421 17374743 ~ 17381733 (-) False LOC103024241
XM_022669224.1 mRNA upstream 37421 17374743 ~ 17381415 (-) False LOC103024241
XM_015606342.2 mRNA upstream 77753 17415075 ~ 17421795 (-) True rsl1d1
XM_022669439.1 mRNA upstream 93684 17431006 ~ 17438492 (-) True LOC111192420
XM_022669228.1 mRNA upstream 105319 17442641 ~ 17466671 (-) False LOC111192380
TU50180 other downstream 151186 17179378 ~ 17184405 (-) False LOC103030148
trnal-uag_1 other downstream 240265 17095245 ~ 17095326 (-) True trnal-uag_1
TU50113 other downstream 316673 17016128 ~ 17018918 (-) True G37183
TU49443 other downstream 1495106 15837105 ~ 15840485 (-) False LOC103023526
XR_002649883.1 other downstream 1576728 15758390 ~ 15758863 (-) True LOC111192378
TU50205 other upstream 36862 17374184 ~ 17381597 (-) True LOC103024241
TU50265 other upstream 95650 17432972 ~ 17466024 (-) True G37290
TU50267 other upstream 95650 17432972 ~ 17463317 (-) False G37290
TU50318 other upstream 246728 17584050 ~ 17653785 (-) False LOC103025753
XR_002649888.1 other upstream 355175 17692497 ~ 17705023 (-) False cntd1

Expression Profile