RNA id: TU50244


Basic Information

Item Value
RNA id TU50244
length 1904
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id G37274
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17385841 ~ 17390421 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttgttttcctttattCCTTTAGACATGTTGAATATACAAAGACCTTCTTGGGAGAGATTGACATGAAAAATTGCCATTATATAGTTTTGATGTTAAAGAATTTATACAAATGCATAAAACTCAAATGCAGTGTCCTTACAAAGCTTAAACAATGTACAGGTTTAGCATTACAAGCACATGCAAACACTTAAGTTTACTTAACAAGTGTTTATAAGTCCGTGTTTCCACTAGGTCAGTAAGTCTGACACTAACATCATGCTTGTGACAACTCTTTTGTTCCTCTTTCCATGAAAAACAGTTACAAGCCATAAATGTTGTGCAGTTGCTAAACCTGATCCATGTGAACTTTAATGTGATCCATTACTCATTGTATTGCATGTATGGTGTTTCCTTTAGATGATGACAAAGGGGAATTCCAACATTTTTACTAAATGTCTGCATAATTCAATCCCTAAAATAACAACTTGGTGGTTTGATATGACCGTTAAGCATTGAAAGTATGGATCTCAAGGTCTCCAGCAGGAAAGAACTATGTATTTGTAACCCTTTCTTGCAATATCTTGGTGCTGTAGCTGACTCCAATTTCTGTCTTACAAGTGGAGCAGTTTATATAAAACCAGTATGTGTCATTAGTAAGTGTTAATATGTCACTAATGAAAGTATGCTTAGATTACGTAAAAGAATGTGTGGAATTCCCCTTTACAAAACATATTTGTAAAGGAGactgttggtaaacagtaatttTACCAAGCTTTAACACTTACAAGCAGGACAATCGCAACAACTAAACATGTGAATGTTTGAGTCTTTCAGAGCTGGTCTTTGTAATCCATTAAGAAAATGTTCATAACGAACATTTATAATGCAACACCCATTTAAACATGTTAACATGAACATCTTACTGCAGACAAACTTGCTTTTACTAAAGAATGAGAAATACCCATTTTACTTTCAGAAAGAAATATGAGAGATGTAATGACAcagctataaaataaaaaaaggaactcAAACTGTCAGTGCTCAGAAGTGTAGGCTGgacacagagtgagagagatatagaaagaaacacattttgCTGCTCTTCAGAAAGGACACATTTCCTCCCATGTTCAACCAATTAAGTCCTGCAGTGTGTTGACCGACATCCACCTCCTCGTTCTCTCCCCCCCAGTTCgccctctctctgtgtttcttttccAGGTCCCCTGTGAACTGCAGCGTAAAGACAGTGCTGGACATTTTTCTTCAGAGCTTTCCAGGAGCAGGGGGCATCATTCCGGACATTCCTCCAGACATGCCAGCATTTGGGCCCAACAGAATCTGTCTCTGTTGTTGTAGCTGTTGTTGTTCAAGCTGTAGTCGCTCTGTTTCAAACACAACTGGAAGAACCAGAATCATAAAGGAAGTGGTGCCCACCCACAGTGCACTGCGGGAAAAACTGTAAAGTTTCTTGGCTACAGACAGTGAGCACTGTGCAGATACTTCAGCTGCTGACCGCAGGGTGTCTGGAAACATCTCAGTCAGTCCCCACAGCCTCTCCAGCATGGTCTCATCCAGCTCTTCGTCTTCATCGTCTCCTTCGATGTCTTCCTCATGAGGCCGTGTGTCCACAGGCCCCGCGTCTGGAGACAGCGCCTGCATCCCCgcacacacagctcacacacactgatctcaCACACTCCCACTAACCCGCGCTAAGACCAGCGCAGCGACAGTTCACACAGCGCAGCTACGGGGCGATGCGGTCGCCTGTGTGTTTTAGAGCTGTTGGCAGGCGATGAATCTGAACTGCGGAGCTCCAGCCGGAGGTCAACTCGGTTACATGTGCGCGGAGTAAAGCAGGTCCTCACAGCGGCTCTGCGCTGGGGAACCGCCAGCAGCGCCCCCTGTACCAGGAGAGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50220 lncRNA downstream 48519 17335591 ~ 17337322 (-) True G37254
TU50195 lncRNA downstream 58245 17241176 ~ 17327596 (-) True G37237
TU50196 lncRNA downstream 138388 17241720 ~ 17247453 (-) True G37238
TU50160 lncRNA downstream 263640 17121775 ~ 17122201 (-) True G37217
TU50158 lncRNA downstream 269833 17112502 ~ 17116008 (-) True G37215
TU50286 lncRNA upstream 83489 17473910 ~ 17476836 (-) True LOC103025140
TU50288 lncRNA upstream 98464 17488885 ~ 17494415 (-) True G37298
TU50290 lncRNA upstream 98464 17488885 ~ 17494415 (-) False G37298
TU50307 lncRNA upstream 163151 17553572 ~ 17555922 (-) True G37309
TU50339 lncRNA upstream 315313 17705734 ~ 17708605 (-) True G37333
XM_007251252.3 mRNA downstream 4108 17374743 ~ 17381733 (-) False LOC103024241
XM_022669224.1 mRNA downstream 4426 17374743 ~ 17381415 (-) False LOC103024241
XM_007251259.3 mRNA downstream 59926 17319206 ~ 17325915 (-) False LOC103025298
XM_007251258.3 mRNA downstream 60097 17319206 ~ 17325744 (-) False LOC103025298
XM_022669222.1 mRNA downstream 60251 17319206 ~ 17325590 (-) False LOC103025298
XM_015606342.2 mRNA upstream 24654 17415075 ~ 17421795 (-) True rsl1d1
XM_022669439.1 mRNA upstream 40585 17431006 ~ 17438492 (-) True LOC111192420
XM_022669228.1 mRNA upstream 52220 17442641 ~ 17466671 (-) False LOC111192380
XM_022669227.1 mRNA upstream 52220 17442641 ~ 17465758 (-) True LOC111192380
XM_007239750.2 mRNA upstream 84163 17474584 ~ 17476878 (-) False LOC103025140
TU50205 other downstream 4244 17374184 ~ 17381597 (-) True LOC103024241
TU50180 other downstream 201436 17179378 ~ 17184405 (-) False LOC103030148
trnal-uag_1 other downstream 290515 17095245 ~ 17095326 (-) True trnal-uag_1
TU50113 other downstream 366923 17016128 ~ 17018918 (-) True G37183
TU49443 other downstream 1545356 15837105 ~ 15840485 (-) False LOC103023526
TU50265 other upstream 42551 17432972 ~ 17466024 (-) True G37290
TU50267 other upstream 42551 17432972 ~ 17463317 (-) False G37290
TU50318 other upstream 193629 17584050 ~ 17653785 (-) False LOC103025753
XR_002649888.1 other upstream 302076 17692497 ~ 17705023 (-) False cntd1
XR_002649887.1 other upstream 302077 17692498 ~ 17705023 (-) False cntd1

Expression Profile