RNA id: TU50290


Basic Information

Item Value
RNA id TU50290
length 1496
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G37298
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17488885 ~ 17494415 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TACTGTCTTTTTAAGACTGACAATGAGCTGCATTTTGATTGGCTGCTCTGTATTAAGACTTAAGGCAGGTTTATAATTCTATAATGAGTCCCTTATTGGTCAGAATggggagaaagaaagtaaagctgctttaccTCAGTGGGAAAACAGCTTAgtatggagcagcagagacagtgatTGTTAATAGCTGTTGTAATTATCTGGgcaataaatcagattaaactgcacctgtacagcagtttagctcaaacatgagGAGTTTATTTAATAGTGGAGTTTGTTTGGAACCAGAACTAGACCACCTTCTCCCACAGGTGGTTTGGTCATTACCCATTGCAATTACGGGTTTCACAcctgcccacacacacagcatcaaTGATGCAAATGAACCAGAGTGGtttttaactggaccaaataggGGTGGTTTTAAAAAACACCCTTACTCAAAAAAACGCTTAGTACTGAAACACTCCTGAGAAATGCAGTATGATTAGATGGCCTAAACTGAGATTTGTAAAACTTTATATATTCcaataatttgatttttttttttatttttttttttatttagaggaAACATTAAATCCTTATGTTGTTACAGTATTTAATGTGATGCACATATTCAAATGTGCTGTTAAAATCACGTAAACGGGAGAATTGTtcagtttttaataatgtaaaaatgcacTCCTGACAAAAAACATTCTGAATCAATTTTTGTATAGCTTATTGGATTCTAATTTTCTAGTAAAGTACATAAAAGTGTTTTGAGATGTGTTGGTTTAAAACCTCAGACCCTATCAAacttatttattcactgttttgtCTTCTGGACCCTTGGTCTACCACAAACTTGCACTTTGCTCTTTAAGATCcgacaccagaaaaaaaaatccttatggCACTATTTAGTCTCCTGTCTGCACCTTAGACAACctctaaaaaccttttttttttaatcatgagcATTAAAGAAGTGTTAAATTGGTGCCTGAAATCTGTCGCTTCTGTTTTGTGTTAAAGACGCAACAGTAatagaacagacagacagactactaaaaactgtgtgaaactaaaacacaaacttTAGACATCAAACCTGTCTAATCAagatttgggaaaaaaaatagggAAAACCAtgtatttcagatttttcCATCTGTTTGTACAAAGTAAGCCTCCTCTGTTCGGCTCCTCAACCATCCGTAGCTAAGATAAGCACCGCCCCGAAAATGCCCACGTTGTGCCCGATCAGTTTCATCTGGTTCCAGAACTCCACGCGGCGGGAGCGGTGCCAGTACCCGATGTTTCCGTCTATAAAGAGGATGACCAGCGGCAGGAGGACGGAGAGGATCTGAGAGGAAAGCTGCACGTAGCAGCCGGAGAGGTAGGACAGAGCCAGCACACCAAAGACCACCACCAGCAGCTGGACGGTGACCTCTCCTCCAGGGATGTGGTCCAGGTACGCCAATCTGTCCTCTTGGCTGTGCTGGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50286 lncRNA downstream 12049 17473910 ~ 17476836 (-) True LOC103025140
TU50244 lncRNA downstream 98464 17385841 ~ 17390421 (-) True G37274
TU50220 lncRNA downstream 151563 17335591 ~ 17337322 (-) True G37254
TU50195 lncRNA downstream 161289 17241176 ~ 17327596 (-) True G37237
TU50307 lncRNA upstream 59157 17553572 ~ 17555922 (-) True G37309
TU50339 lncRNA upstream 211319 17705734 ~ 17708605 (-) True G37333
TU50357 lncRNA upstream 295539 17789954 ~ 17795977 (-) False vps25
TU50502 lncRNA upstream 632119 18126534 ~ 18126807 (-) True G37443
TU50503 lncRNA upstream 632839 18127254 ~ 18127560 (-) True G37444
XM_007239750.2 mRNA downstream 12007 17474584 ~ 17476878 (-) False LOC103025140
XM_022669228.1 mRNA downstream 22214 17442641 ~ 17466671 (-) False LOC111192380
XM_022669227.1 mRNA downstream 23127 17442641 ~ 17465758 (-) True LOC111192380
XM_022669439.1 mRNA downstream 50393 17431006 ~ 17438492 (-) True LOC111192420
XM_015606342.2 mRNA downstream 67090 17415075 ~ 17421795 (-) True rsl1d1
XM_015603206.2 mRNA upstream 6054 17500469 ~ 17504817 (-) True LOC103024821
XM_007239748.3 mRNA upstream 15545 17509960 ~ 17517710 (-) True lsm12
XM_022669440.1 mRNA upstream 40288 17534703 ~ 17689384 (-) True LOC103025753
XM_007248767.3 mRNA upstream 198089 17692504 ~ 17705023 (-) False cntd1
XM_022669229.1 mRNA upstream 204015 17698430 ~ 17705021 (-) False cntd1
TU50265 other downstream 22861 17432972 ~ 17466024 (-) True G37290
TU50267 other downstream 25568 17432972 ~ 17463317 (-) False G37290
TU50205 other downstream 107288 17374184 ~ 17381597 (-) True LOC103024241
TU50180 other downstream 304480 17179378 ~ 17184405 (-) False LOC103030148
trnal-uag_1 other downstream 393559 17095245 ~ 17095326 (-) True trnal-uag_1
TU50318 other upstream 89635 17584050 ~ 17653785 (-) False LOC103025753
XR_002649888.1 other upstream 198082 17692497 ~ 17705023 (-) False cntd1
XR_002649887.1 other upstream 198083 17692498 ~ 17705023 (-) False cntd1
XR_002649886.1 other upstream 198083 17692498 ~ 17705023 (-) True cntd1
XR_002649889.1 other upstream 295536 17789951 ~ 17795986 (-) True vps25

Expression Profile