RNA id: TU50318


Basic Information

Item Value
RNA id TU50318
length 926
RNA type TUCP
GC content 0.54
exon number 3
gene id LOC103025753
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17534703 ~ 17689384 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctctctctctctctctttctttttcgcTCTTGCTCTCGCGctacctctccctctccctcctcaCCATTCCACAATTCCAGCTCCGACGCTCCACAGTTTTTCATCACCATTCTGCTTCATGGTGCTGGTCTAGGACGTGCCAGTCGGCCACCAATCGGTGGAACCGCCTCCACCGAGGAGCGAGGCTTTGCCCGGAGGAAGATGAATGAGGAGAAGGACTGAAGTCCAAGGTCTGTCTTTCTGCTCCAGGCAAGAAAGAAGAGGTCTCCTTGACTTGACGTCTCTCCACCTTCAGTCGTTGTCCATCCGCCCATCTCTCCTCCGTCTCTCAGGGTCGCTCTCGCTCTGCACTGGCTTTTGATCGCGTGGACCTGCGTATCAGCATCCGTCGGAAGCTCTGAccggagggtgtgtgtgtgtgtgtgagtgtgcttgTGTGCTTGTGTGGGCGCACAGCGAAGTGTTGTGGATGAGCTGGCCATCGTTGAGGCGGCTGCAGGggctgtgtgtgtctctggaCGGAGAGGGCGACGGACGAGAGCTGGTGCCCTATGCCAGTCTGGCTGCCCAATGCGGGAACTGGTATGAGCATGCACCGGTGCGGAAAGCTAAGTTTGTGGAGAGCCCCCGCATCCCCGAGTCTGCACTCTGCTACACCACACACATTGCTCCCGCTGCACGGAACCCCCACCCGGATACACATTGGCCCGGTAAGACCCGGCCGGACCCCTCCTccatctatgtgtgtgtgtgtgtgtgtgtgtttaacattaACAGCATTAGATTCACATATATTGCTTTTCTCTTTATGTTCTCCTGCTCCCTAACATAGCTAGTAGCTAACATAGCGTAGCATTGTGCTTGGTTATGAGTGTTAAATATGTGCTGAGGGAgtgttatatatttaacaagacagctgattgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50307 lncRNA downstream 28128 17553572 ~ 17555922 (-) True G37309
TU50288 lncRNA downstream 89635 17488885 ~ 17494415 (-) True G37298
TU50290 lncRNA downstream 89635 17488885 ~ 17494415 (-) False G37298
TU50286 lncRNA downstream 107214 17473910 ~ 17476836 (-) True LOC103025140
TU50244 lncRNA downstream 193629 17385841 ~ 17390421 (-) True G37274
TU50339 lncRNA upstream 51949 17705734 ~ 17708605 (-) True G37333
TU50357 lncRNA upstream 136169 17789954 ~ 17795977 (-) False vps25
TU50502 lncRNA upstream 472749 18126534 ~ 18126807 (-) True G37443
TU50503 lncRNA upstream 473469 18127254 ~ 18127560 (-) True G37444
TU50508 lncRNA upstream 484164 18137949 ~ 18139122 (-) True G37449
XM_007239748.3 mRNA downstream 66340 17509960 ~ 17517710 (-) True lsm12
XM_015603206.2 mRNA downstream 79233 17500469 ~ 17504817 (-) True LOC103024821
XM_007239750.2 mRNA downstream 107172 17474584 ~ 17476878 (-) False LOC103025140
XM_022669228.1 mRNA downstream 117379 17442641 ~ 17466671 (-) False LOC111192380
XM_022669227.1 mRNA downstream 118292 17442641 ~ 17465758 (-) True LOC111192380
XM_007248767.3 mRNA upstream 38719 17692504 ~ 17705023 (-) False cntd1
XM_022669229.1 mRNA upstream 44645 17698430 ~ 17705021 (-) False cntd1
XM_022669441.1 mRNA upstream 57215 17711000 ~ 17784278 (-) True wnk4
XM_007248682.3 mRNA upstream 136608 17790393 ~ 17795988 (-) False vps25
XM_007248686.3 mRNA upstream 149949 17803734 ~ 17820280 (-) False LOC103047174
TU50265 other downstream 118026 17432972 ~ 17466024 (-) True G37290
TU50267 other downstream 120733 17432972 ~ 17463317 (-) False G37290
TU50205 other downstream 202453 17374184 ~ 17381597 (-) True LOC103024241
TU50180 other downstream 399645 17179378 ~ 17184405 (-) False LOC103030148
trnal-uag_1 other downstream 488724 17095245 ~ 17095326 (-) True trnal-uag_1
XR_002649888.1 other upstream 38712 17692497 ~ 17705023 (-) False cntd1
XR_002649887.1 other upstream 38713 17692498 ~ 17705023 (-) False cntd1
XR_002649886.1 other upstream 38713 17692498 ~ 17705023 (-) True cntd1
XR_002649889.1 other upstream 136166 17789951 ~ 17795986 (-) True vps25
XR_002649891.1 other upstream 628705 18282490 ~ 18317957 (-) False LOC103047479

Expression Profile