RNA id: TU50357


Basic Information

Item Value
RNA id TU50357
length 1464
lncRNA type sense_over
GC content 0.43
exon number 7
gene id vps25
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17789951 ~ 17795988 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGTGAGGCAGGCTGACAGacTGCAGCCAAATGTTGATACAAGACAGAAGCAGCTGGCGGCGTGGTGCTCGCTCGTCTTGTCATATTTCCGCCATCGGAAGCTTTACACAGTCGACGTGCTGGAGGCTCAAGAAAGCCCCGTGTTCAACAACAAGAAGATCGAGAGAAAGCTCTCTGTTGAGGCTATACAGGTTGTCTTTGAGGAGCTgagaaaaaaagGGAACCTGGAATGGATGGACAAAAACAAAACGCGCTGTTTAATCATGTGGCGAAGACCTGAGGAGTGGGGCAAGCTGATTTATCAGTGGGTCTCTAAAAACGGCATGGTCAACTCAGTGTTTACACTTTATGAACTGTCTAACGGTGACGACACAGAAAACGAAGAATTCCATGGGCTTGAGGACTGGATGCTGCTGCGCTCTCTGCAGGCCCTGCAGACTGAAGGCAAGGCAGAAATCATCACGATGGACGACGGGAAAGGAGTCAAGTTCTTCTGAATTGCGCTTTTCAGAATCAGACTTTGGGAAGGCGGGGTTAATGGGCTTCTTCTACTGGGTTCAACTCTCAGATGGCCTCTAGGGGCCGGTTTTCCTGATGCAGATTAAGTCTAGGACTGGACTTAATGGGATTTCCAATGCGGATCCCCACCTAACGGTGTGTTCCAGTCTTAAGCTGTGACCAGAAAATCATTCTGAATTCTGTTTTTAACCTAATTTGCTTCTGTAGCATACGGCCGATTAGCAGAGGCTATAATCAGTGTACCTGTTGCTGAAATGTTCATTTGGTTCTTTCAGTAGATTTTCAGCACAGGAAAATTATTCATGATCTATTGCTAATGCTAAGCAGTGACTCGCTAACTGCAGGGAGAGATAAGGATAAAAACTACTGTAATCAAGTCAATGCATTGCATAGATATACCCAAAAAcccaaaatacataaatactttCCTTGTTGGAACTGTTCTGATATTGGTGGTTTTACACCTGACAAACTGACTTATAGATTAAAGATTTCAGAGAATTTAGCAAAACAAGACACGGGATTTCACTCCAGGACATCATGCAAATGGCTGGAAGTTCAGTCAACCACTAATGCAtatcagaaacaaacaaaaaaaatgttttgaaaaatcTCCACCTCGACTCGACTCTTCCTTTGTACATAAAGTTAGTTTTTGCTGTAAATCCCACAGGACTCTATTACTTGAATATCTCCTTTGTGTGCTACCATGTCAACCCAAAGGACCCCTGTTTGGGAACCTCCTAACGATTCCTGGTTAAAAAGAGACTAATCTAACTCTCTGGCATAAAACGTGACGGTGCTGGTGGTCCATGTGGTTCATACCAACAATTTGCTGAAACTTCTCAGTAGCATTATGTTACTTTTCTTGTTTGTGTCCCTCCACCTTTTCTACCAGTGTAAAACTGTACAAATACTGTACAAATAAACCGGACAGGTTTTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50339 lncRNA downstream 81349 17705734 ~ 17708605 (-) True G37333
TU50307 lncRNA downstream 234032 17553572 ~ 17555922 (-) True G37309
TU50288 lncRNA downstream 295539 17488885 ~ 17494415 (-) True G37298
TU50290 lncRNA downstream 295539 17488885 ~ 17494415 (-) False G37298
TU50286 lncRNA downstream 313118 17473910 ~ 17476836 (-) True LOC103025140
TU50502 lncRNA upstream 330557 18126534 ~ 18126807 (-) True G37443
TU50503 lncRNA upstream 331277 18127254 ~ 18127560 (-) True G37444
TU50508 lncRNA upstream 341972 18137949 ~ 18139122 (-) True G37449
TU50509 lncRNA upstream 344815 18140792 ~ 18141076 (-) True G37450
TU50510 lncRNA upstream 346030 18142007 ~ 18142377 (-) True G37451
XM_022669441.1 mRNA downstream 5676 17711000 ~ 17784278 (-) True wnk4
XM_007248767.3 mRNA downstream 84931 17692504 ~ 17705023 (-) False cntd1
XM_022669229.1 mRNA downstream 84933 17698430 ~ 17705021 (-) False cntd1
XM_022669440.1 mRNA downstream 100570 17534703 ~ 17689384 (-) True LOC103025753
XM_007239748.3 mRNA downstream 272244 17509960 ~ 17517710 (-) True lsm12
XM_007248686.3 mRNA upstream 7757 17803734 ~ 17820280 (-) False LOC103047174
XM_007248685.3 mRNA upstream 7757 17803734 ~ 17820280 (-) True LOC103047174
XM_007248687.3 mRNA upstream 26781 17822758 ~ 17836906 (-) True maz
XM_007248689.3 mRNA upstream 43450 17839427 ~ 17872154 (-) True taok2
XM_007248692.3 mRNA upstream 108227 17904204 ~ 17918797 (-) False LOC103022355
XR_002649888.1 other downstream 84931 17692497 ~ 17705023 (-) False cntd1
XR_002649887.1 other downstream 84931 17692498 ~ 17705023 (-) False cntd1
XR_002649886.1 other downstream 84931 17692498 ~ 17705023 (-) True cntd1
TU50318 other downstream 136169 17584050 ~ 17653785 (-) False LOC103025753
TU50267 other downstream 326637 17432972 ~ 17463317 (-) False G37290
XR_002649891.1 other upstream 486513 18282490 ~ 18317957 (-) False LOC103047479
TU50696 other upstream 776714 18572691 ~ 18573176 (-) True G37603
TU50715 other upstream 837601 18633578 ~ 18635098 (-) True G37616
TU51149 other upstream 2022291 19818268 ~ 19825652 (-) True c4h10orf128
TU51712 other upstream 4077343 21873320 ~ 21878377 (-) True G38338

Expression Profile