RNA id: XR_002649889.1


Basic Information

Item Value
RNA id XR_002649889.1
length 1536
RNA type misc_RNA
GC content 0.43
exon number 7
gene id vps25
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17789951 ~ 17795988 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTCCATAGCTGTGAGGCAGGCTGACAGGTTAGTGTTGGAGATGAGTTTTGAGTGGCCCTGGCAGTACAATTTCCCTCCGTTCTTCACacTGCAGCCAAATGTTGATACAAGACAGAAGCAGCTGGCGGCGTGGTGCTCGCTCGTCTTGTCATATTTCCGCCATCGGAAGCTTTACACAGTCGACGTGCTGGAGGCTCAAGAAAGCCCCGTGTTCAACAACAAGAAGATCGAGAGAAAGCTCTCTGTTGAGGCTATACAGGTTGTCTTTGAGGAGCTgagaaaaaaagGGAACCTGGAATGGATGGACAAAAACAAAACGCGCTGTTTAATCATGTGGCGAAGACCTGAGGAGTGGGGCAAGCTGATTTATCAGTGGGTCTCTAAAAACGGCATGGTCAACTCAGTGTTTACACTTTATGAACTGTCTAACGGTGACGACACAGAAAACGAAGAATTCCATGGGCTTGAGGACTGGATGCTGCTGCGCTCTCTGCAGGCCCTGCAGACTGAAGGCAAGGCAGAAATCATCACGATGGACGACGGGAAAGGAGTCAAGTTCTTCTGAATTGCGCTTTTCAGAATCAGACTTTGGGAAGGCGGGGTTAATGGGCTTCTTCTACTGGGTTCAACTCTCAGATGGCCTCTAGGGGCCGGTTTTCCTGATGCAGATTAAGTCTAGGACTGGACTTAATGGGATTTCCAATGCGGATCCCCACCTAACGGTGTGTTCCAGTCTTAAGCTGTGACCAGAAAATCATTCTGAATTCTGTTTTTAACCTAATTTGCTTCTGTAGCATACGGCCGATTAGCAGAGGCTATAATCAGTGTACCTGTTGCTGAAATGTTCATTTGGTTCTTTCAGTAGATTTTCAGCACAGGAAAATTATTCATGATCTATTGCTAATGCTAAGCAGTGACTCGCTAACTGCAGGGAGAGATAAGGATAAAAACTACTGTAATCAAGTCAATGCATTGCATAGATATACCCAAAAAcccaaaatacataaatactttCCTTGTTGGAACTGTTCTGATATTGGTGGTTTTACACCTGACAAACTGACTTATAGATTAAAGATTTCAGAGAATTTAGCAAAACAAGACACGGGATTTCACTCCAGGACATCATGCAAATGGCTGGAAGTTCAGTCAACCACTAATGCAtatcagaaacaaacaaaaaaaatgttttgaaaaatcTCCACCTCGACTCGACTCTTCCTTTGTACATAAAGTTAGTTTTTGCTGTAAATCCCACAGGACTCTATTACTTGAATATCTCCTTTGTGTGCTACCATGTCAACCCAAAGGACCCCTGTTTGGGAACCTCCTAACGATTCCTGGTTAAAAAGAGACTAATCTAACTCTCTGGCATAAAACGTGACGGTGCTGGTGGTCCATGTGGTTCATACCAACAATTTGCTGAAACTTCTCAGTAGCATTATGTTACTTTTCTTGTTTGTGTCCCTCCACCTTTTCTACCAGTGTAAAACTGTACAAATACTGTACAAATAAACCGGACAGGTTTTCATTTC

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K12189 VPS25, EAP20; ESCRT-II complex subunit VPS25

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50339 lncRNA downstream 81346 17705734 ~ 17708605 (-) True G37333
TU50307 lncRNA downstream 234029 17553572 ~ 17555922 (-) True G37309
TU50288 lncRNA downstream 295536 17488885 ~ 17494415 (-) True G37298
TU50290 lncRNA downstream 295536 17488885 ~ 17494415 (-) False G37298
TU50286 lncRNA downstream 313115 17473910 ~ 17476836 (-) True LOC103025140
TU50502 lncRNA upstream 330548 18126534 ~ 18126807 (-) True G37443
TU50503 lncRNA upstream 331268 18127254 ~ 18127560 (-) True G37444
TU50508 lncRNA upstream 341963 18137949 ~ 18139122 (-) True G37449
TU50509 lncRNA upstream 344806 18140792 ~ 18141076 (-) True G37450
TU50510 lncRNA upstream 346021 18142007 ~ 18142377 (-) True G37451
XM_022669441.1 mRNA downstream 5673 17711000 ~ 17784278 (-) True wnk4
XM_007248767.3 mRNA downstream 84928 17692504 ~ 17705023 (-) False cntd1
XM_022669229.1 mRNA downstream 84930 17698430 ~ 17705021 (-) False cntd1
XM_022669440.1 mRNA downstream 100567 17534703 ~ 17689384 (-) True LOC103025753
XM_007239748.3 mRNA downstream 272241 17509960 ~ 17517710 (-) True lsm12
XM_007248686.3 mRNA upstream 7748 17803734 ~ 17820280 (-) False LOC103047174
XM_007248685.3 mRNA upstream 7748 17803734 ~ 17820280 (-) True LOC103047174
XM_007248687.3 mRNA upstream 26772 17822758 ~ 17836906 (-) True maz
XM_007248689.3 mRNA upstream 43441 17839427 ~ 17872154 (-) True taok2
XM_007248692.3 mRNA upstream 108218 17904204 ~ 17918797 (-) False LOC103022355
XR_002649888.1 other downstream 84928 17692497 ~ 17705023 (-) False cntd1
XR_002649887.1 other downstream 84928 17692498 ~ 17705023 (-) False cntd1
XR_002649886.1 other downstream 84928 17692498 ~ 17705023 (-) True cntd1
TU50318 other downstream 136166 17584050 ~ 17653785 (-) False LOC103025753
TU50265 other downstream 323927 17432972 ~ 17466024 (-) True G37290
XR_002649891.1 other upstream 486504 18282490 ~ 18317957 (-) False LOC103047479
TU50696 other upstream 776705 18572691 ~ 18573176 (-) True G37603
TU50715 other upstream 837592 18633578 ~ 18635098 (-) True G37616
TU51149 other upstream 2022282 19818268 ~ 19825652 (-) True c4h10orf128
TU51712 other upstream 4077334 21873320 ~ 21878377 (-) True G38338

Expression Profile