RNA id: TU50653


Basic Information

Item Value
RNA id TU50653
length 1027
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G37565
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 18410521 ~ 18449197 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGTTTGACTTGTTTTAATGGTACTATTTACAAGCCTTTTTTTCCTGCAAATGATTTAACTTCTCGAACAATTAAAACGTACAATGAAACCTGTCTTGAGTAACTACAAAAACAAAGACCatggaggaaaaaaaggaacaaagaaaaataaaacagaaaacaaaaactgtgattgaaggaaaaaaaacaaagacaaacagGGACAAGATTATGAGATGATCATAAACCATAATAAATGTTGAGTTGCATAGCCAGTAGTTACTCCGGGCGACAGTGCTGAAGAGGAAATGAAACTGAGATCAGATCTGCTGCATTTAAACACAAATGGCGAAcaagaataaacagaagctTCACTGGAGAGAAACGGACGCCTGTAGAACTGCAGAACCTGAGAGTAAGGAGGGTCGGGGAAGTTGGAGATGTTAGGCATGAAAGATTACTTTCTTTAGTTACAAAATGACTGGGAGAGGAAGAAGGTAAGAAGGGATGAAGATATGACGGCGATGTGGAGGAACTTGTGGAGGAACTTGAACTGAGCTCAGCTTCCATAATGTTCATTATGAGCCCCAGCTGTGAATTCTCTACATGATGTAGAATCAGACTGCGATTTCTGCCGATGTGGATTAACTCCGTATCTGAGGGGTGACTGGAGAAAAACAGGGCTGCTGAAAGAGTGCAGAGGAGATGGACAGACTGTGTACAGACAGATACGAACATCGTATGAAGTGCTTCTAGTCGTGGATGCTCTGATGATTCGATGTGTGTCTATTAGTTGAGATTAATGAGGAGGGAAAACCTACTTCGTCTGGATTTGGTCGTTGTCACTCCACAGTACAAGCATACACAAACTAGTCAGCAAGGAAACACCCTTTTGGTCAAGTCCCCTTCCTGAAGTCTGCTACATAGTGCGCTACGAAGTGATCACCTGACAGGTTAGAATACCACACCAAGAACATAGTTTAGCTGACTATAAGAATAATTatgcttttgatttttttttttttttgtgtttttttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50518 lncRNA downstream 221077 18188473 ~ 18189444 (-) True G37459
TU50517 lncRNA downstream 222513 18187049 ~ 18188008 (-) True G37458
TU50516 lncRNA downstream 223610 18186368 ~ 18186911 (-) True G37457
TU50515 lncRNA downstream 224231 18185594 ~ 18186290 (-) True G37456
TU50514 lncRNA downstream 239167 18171142 ~ 18171354 (-) True G37455
XR_454725.2 lncRNA upstream 83419 18532616 ~ 18534771 (-) True LOC103035005
TU50689 lncRNA upstream 98428 18547625 ~ 18547908 (-) True G37596
TU50690 lncRNA upstream 98886 18548083 ~ 18550231 (-) True G37597
TU50691 lncRNA upstream 105152 18554349 ~ 18554604 (-) True G37598
TU50693 lncRNA upstream 113914 18563111 ~ 18563493 (-) True G37600
XM_007248733.3 mRNA downstream 603 18388678 ~ 18409918 (-) True LOC103033508
XM_022669258.1 mRNA downstream 604 18388678 ~ 18409917 (-) False LOC103033508
XM_022669259.1 mRNA downstream 605 18388678 ~ 18409916 (-) False LOC103033508
XM_022669257.1 mRNA downstream 26116 18360572 ~ 18384405 (-) False LOC103033182
XM_022669256.1 mRNA downstream 26116 18360572 ~ 18384405 (-) True LOC103033182
XM_022669271.1 mRNA upstream 3749 18452946 ~ 18498356 (-) False LOC103047794
XM_022669268.1 mRNA upstream 3749 18452946 ~ 18498356 (-) False LOC103047794
XM_022669265.1 mRNA upstream 3749 18452946 ~ 18498356 (-) False LOC103047794
XM_022669264.1 mRNA upstream 3749 18452946 ~ 18498356 (-) False LOC103047794
XM_022669269.1 mRNA upstream 3749 18452946 ~ 18498356 (-) False LOC103047794
XR_002649891.1 other downstream 92564 18282490 ~ 18317957 (-) False LOC103047479
XR_002649889.1 other downstream 614535 17789951 ~ 17795986 (-) True vps25
XR_002649888.1 other downstream 705498 17692497 ~ 17705023 (-) False cntd1
XR_002649887.1 other downstream 705498 17692498 ~ 17705023 (-) False cntd1
XR_002649886.1 other downstream 705498 17692498 ~ 17705023 (-) True cntd1
TU50696 other upstream 123494 18572691 ~ 18573176 (-) True G37603
TU50715 other upstream 184381 18633578 ~ 18635098 (-) True G37616
TU51149 other upstream 1369071 19818268 ~ 19825652 (-) True c4h10orf128
TU51712 other upstream 3424123 21873320 ~ 21878377 (-) True G38338
TU52138 other upstream 5016022 23465219 ~ 23510619 (-) False LOC111192393

Expression Profile