RNA id: TU50691



Basic Information


Item Value
RNA id TU50691
length 256
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G37598
representative True

Chromosome Information


Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 18554349 ~ 18554604 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


CCTGAAGTCACCTTCATTATTGATGTAGGCTTTAAAGTCGAAAGTGCTGTTGGTAAAGGTGTGGTTGTAGGCGGGGGTGGAGGTGTACTCCTCCATGGTGCTGTTGGAGATGGGCCACCGTATGCACTTGTGCCGCAGGTTCCCCATAAACAGCTGCAGACCAATGAGAGCGAACACGGCCAGAGCGAAGACCGTCAGAATCATCACGTCTACCATTTTCTTCACTGACTGGATCAAAGCTCCAACAATAGTTTTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU50690 lncRNA downstream 4118 18548083 ~ 18550231 (-) True G37597
TU50689 lncRNA downstream 6441 18547625 ~ 18547908 (-) True G37596
XR_454725.2 lncRNA downstream 19578 18532616 ~ 18534771 (-) True LOC103035005
TU50653 lncRNA downstream 105152 18410521 ~ 18449197 (-) True G37565
TU50693 lncRNA upstream 8507 18563111 ~ 18563493 (-) True G37600
TU50694 lncRNA upstream 10137 18564741 ~ 18565071 (-) True G37601
TU50695 lncRNA upstream 11060 18565664 ~ 18566018 (-) True G37602
TU50697 lncRNA upstream 23830 18578434 ~ 18578712 (-) True G37604
TU50698 lncRNA upstream 26281 18580885 ~ 18581316 (-) True G37605
XM_007248735.3 mRNA downstream 42264 18503640 ~ 18512085 (-) True LOC103034677
XM_022669263.1 mRNA downstream 55993 18456646 ~ 18498356 (-) False LOC103047794
XM_022669262.1 mRNA downstream 64681 18452946 ~ 18489668 (-) False LOC103047794
XM_022669290.1 mRNA upstream 508253 19062857 ~ 19124736 (-) True LOC107197613
XM_022669294.1 mRNA upstream 725382 19279986 ~ 19291010 (-) True LOC103043551
XM_022669298.1 mRNA upstream 776063 19330667 ~ 19340948 (-) True LOC111192386
XM_022669301.1 mRNA upstream 787425 19342029 ~ 19353789 (-) False lrrc45
XM_022669300.1 mRNA upstream 787425 19342029 ~ 19353789 (-) False lrrc45
XR_002649891.1 other downstream 236392 18282490 ~ 18317957 (-) False LOC103047479
XR_002649889.1 other downstream 758363 17789951 ~ 17795986 (-) True vps25
XR_002649888.1 other downstream 849326 17692497 ~ 17705023 (-) False cntd1
TU50696 other upstream 18087 18572691 ~ 18573176 (-) True G37603
TU50715 other upstream 78974 18633578 ~ 18635098 (-) True G37616
TU51149 other upstream 1263664 19818268 ~ 19825652 (-) True c4h10orf128
TU51712 other upstream 3318716 21873320 ~ 21878377 (-) True G38338
TU52138 other upstream 4910615 23465219 ~ 23510619 (-) False LOC111192393

Expression Profile