RNA id: TU50695


Basic Information

Item Value
RNA id TU50695
length 355
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G37602
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 18565664 ~ 18566018 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CACAAGGTTTCCTATGACCATGACCATCATGAAGACCACCAGGCACATGCCTGCTCCAGCCACCTCCATGCAGTCCCACATGGTCTCGATCCACTCCCCGCACAGGATGCGGAAGACGATGAGGAAGGAGTGGAAGAAGTCGTTCATGTGCCAGCGGGGCAGCTCGCAGTCCTGAGCGATCTTACACACGCAGTCCTTGTAGCTCTTGCCAAAGAGCTGCATTCCCACCACAGCAAAGATGAAGACAATGATCGCCAGCACCAGGGTCAGGTTCCCCAGAGCTCCCACCGAGTTGCCAATGATCTTGATCAGCATGTTGAGCGTGGGCCAGGATTTTGCCAGCTTGAAGACACGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50694 lncRNA downstream 593 18564741 ~ 18565071 (-) True G37601
TU50693 lncRNA downstream 2171 18563111 ~ 18563493 (-) True G37600
TU50691 lncRNA downstream 11060 18554349 ~ 18554604 (-) True G37598
TU50690 lncRNA downstream 15433 18548083 ~ 18550231 (-) True G37597
TU50689 lncRNA downstream 17756 18547625 ~ 18547908 (-) True G37596
TU50697 lncRNA upstream 12416 18578434 ~ 18578712 (-) True G37604
TU50698 lncRNA upstream 14867 18580885 ~ 18581316 (-) True G37605
TU50699 lncRNA upstream 15408 18581426 ~ 18587478 (-) True G37606
TU50705 lncRNA upstream 32239 18598257 ~ 18605649 (-) True G37609
TU50708 lncRNA upstream 49204 18615222 ~ 18620375 (-) True G37612
XM_007248735.3 mRNA downstream 53579 18503640 ~ 18512085 (-) True LOC103034677
XM_022669263.1 mRNA downstream 67308 18456646 ~ 18498356 (-) False LOC103047794
XM_022669262.1 mRNA downstream 75996 18452946 ~ 18489668 (-) False LOC103047794
XM_022669290.1 mRNA upstream 496839 19062857 ~ 19124736 (-) True LOC107197613
XM_022669294.1 mRNA upstream 713968 19279986 ~ 19291010 (-) True LOC103043551
XM_022669298.1 mRNA upstream 764649 19330667 ~ 19340948 (-) True LOC111192386
XM_022669301.1 mRNA upstream 776011 19342029 ~ 19353789 (-) False lrrc45
XM_022669300.1 mRNA upstream 776011 19342029 ~ 19353789 (-) False lrrc45
XR_002649891.1 other downstream 247707 18282490 ~ 18317957 (-) False LOC103047479
XR_002649889.1 other downstream 769678 17789951 ~ 17795986 (-) True vps25
XR_002649888.1 other downstream 860641 17692497 ~ 17705023 (-) False cntd1
TU50696 other upstream 6673 18572691 ~ 18573176 (-) True G37603
TU50715 other upstream 67560 18633578 ~ 18635098 (-) True G37616
TU51149 other upstream 1252250 19818268 ~ 19825652 (-) True c4h10orf128
TU51712 other upstream 3307302 21873320 ~ 21878377 (-) True G38338
TU52138 other upstream 4899201 23465219 ~ 23510619 (-) False LOC111192393

Expression Profile