RNA id: XM_022669276.1


Basic Information

Item Value
RNA id XM_022669276.1
length 6474
RNA type mRNA
GC content 0.45
exon number 19
gene id LOC103022762
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 18645635 ~ 18707728 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCATGAGCcgcctccctcctcctcctgttcACTGTATTGCTGAGAGCTACAGCTCAAAGCCcgtctgtgtgtaatgtgaagcTCTACAAAAACAACCTGAAGGATCTGGGGGAAGGGAGGCTGACGTGATGAAAACACCTGTTGCTGTGGTGCTGTGGGGCAAAAGGAGAAGTCTGCACTGCCGCCTcgctttctgtgtgtgtgtaggtaggCTGCCATCCTCCAACGATGATCCATGATAAGCCTTGACTTGGGACCGCAGAGCACTGGGAACAATGTCAGCTTCACAGGTGGTGCTGGTGAACTTCCAGTATGAGTACACAGCTCGTGATGGCAACCAGGTGGCCATCAAACCCAACGAGCGCTACGTGCTGGTGGCCAAAACCAACGACCACTGGTGGCATGTGCGCAAAGACGAGAGCACCAAACCTTTCTTCATCCCAGCGGGATATGTAACGGAGTTACCCCCGGAGAACAACTTCACATTCCCTGACCCTCCACCGGAGGAAGGAGGTGGGCTGGATCCCCCAAAACCTTCTTTTGAAATTACACCTTCTAATACAGGGAATTATTCAGGTGAGGTGACCATCAGAGACCCTACATCCATCAGGAAAGACACGAAGAAGGACGGCCACAGGATCTCAACGTTTATCATCCCGGAGGATCTGTATGACAACAGGTTCTGTGAGTCAGTGGCATCTGAGGCTAAAACTGAGAAAGAGCCCAAATCTTGCAACGTACTCATAGATAAAACAAAGGTAGATGACTCTCACCGGGGGACACCAGACTCTTCTTCACTTTTTAATGATGAGGAAAGCCCCTACGCCGTCTCTCCACCACATTTTCTTACTCTACGTTCACAAAGCAAAGGAACAGAACCCAACAGAGCTAATGCTGAGGTCCAGTCCCCTAAAAACTCCTCTAAAAACATAGAAGAAGACATTCAAATGCTCAAAAGAGCCGGCTGGGACCTAAAAATATGGAATCTAATGGACGATGGTATCTATGAGTCGATAGACAACGTTAAAAATTCTGTGGAGACAAAAGACAATGAAGCAGAAGTTCCACCACCCACATCACCTCGATCTCCTTCAGCACCTTCCACTCCCGTCTCTACAAACGAGCAAACTCCCAGATCTCCCATCGGCCTACCAGAAGCTCCTCCAGAGAAGGTGGAAGACGATGACGTGTCGGCAGTCTACGTGAATGTCCCCAGGGTCCGGCGCAGTTCCTCCGGCTTGccgttctcctccacctcccCACAGTCCTCCTCTTGGGGGGTTTCAGACTCACCAGACTCTCCTCCCCACCTCCCCGACTCCGTTCACCTGGGCTCTAAGGGATGGGAGATCCACACTGACCAGGACAGCGGTCAGCAGTACTATTATCAGCCCAGTACAGGCTGCAGCACCTGGGACTACCCGCTTAAAACCTCCATGGAGTCCAGCTCAGGGATGGGGGTGCCTCCCATATCCCCCTCCCCCGCCCAGTCTCCAGCCTGCTCTCCTCAAGGCCCCTCCCCACCAAGATGGAGCTCGGACTGGGAGAAGGTGCTGGACGAGAACAGCGGCCGACACTACTTCTTCAACCCTGTATCAGGACAGAGCTCCTGGGACCCACCAGAGGACCTGCCAGGGAGTCTGCAGGACATTGGTCCACCTCCGCTCCCTGAGGAAGACTACCCCGCCGAAGAGGACATCCCTGTGTCCCCATGCCAGGAGGACGCCGTGTCCCCGCTGCCCTTCCCCCTCACCTCCGAGTACTCTCTCGCTCATGTGACTAAAGCGGTGATCCCTCGAGCGTGTCTGGACCGCAGTACTCCTGCAGGCTGGACCCTCAGCGTAGACCCAGATGGAGCGTGGGTCTTCACCAGCGAGCTCACACAGGAACAGTGGATCAAATCGCTGGACGATCGAGGACAGACATACTACTACCTGAGAGATGGCTCCAAATCCCAGTGGACCTTACCTGAGctctctGCTGGTCTGGGTCAGTGTCGGTTGGGGAATGGAGGGGCAGTGGAGCCTGATGGAGGGATGAGGAGCTGGAGGAATAGTACAGGATCTCAGGATGagAAGCTCTCCCTGAGCCATCGCAGGAATGCCTCAGACAGTGACGCCTCCAGCTCGCCGGAAATGCCTCATAATACGTCACCTGCAAAAGCTTCTACAACTGAGCCTGAGAAGATGCCGATCAACCAAAACTCAGAATCTCCACCACAGAAAATGTCCAATTTGGAGAAAGCTGGAATCCTCAACAAGACCAAGATCTGTGATAACGGGAAGAAAGTCAGaaagaaCTGGGGTCTTTCGTGGACTGTTCTTCATGGAGGGATTCTTACATTTCATAAGGACCCAAAGTCCAACCCAACAGGAGCAGCGAGCAAGACCAACCAGTTTGTTCCAGAGTTCACAGTAGATCTGAGAGGAGCGATGATTGGCTGGGCAGCGAAAGAGAAGTCCAGCAAGAAGAACGTACTGGAGttgaAAAGCAGGGCTGGTGCAGAGTTCTTGGTCCAATACGACACCGAGAGCATCATCAACGACTGGCACAAAGTCATCACTGACACCATACGACAGCTGGATGTGGAGCAGCACCACTCTGAAGACGAAGAGGAGGTCAGTGAAAAGACCTTCAGCTCAGAGAAGGAGGACAGACCCGTGGCCATTGCAGACAGGCGGCGGATGAGTAATGCCGGCAAGCTTTCGTCCAGTTTCTCATCTTCTGAATCCGACCCCAAGAAGGTTCGGAACAAACTGAAGAAGTTCCTCTTGAAAAGGCCGACCTTACAGTCCGTAAAGGAGAAGGGCTACATCAGAGAAAACGTGTTTGGCTGTCACCTACACAACCTCTGCGCCCAGGAGAAAACCACCGTGCCCAGCTTTGTGGAGAAGTGTATTCGGACGGTGGAGAAAAGAGGTTTGGGGATTGATGGAATCTACAGAGTCAGCGGGAACCTGGCCGTTATTCAGAAACTGCGTTTCAGAGCTGATCATGCAGAGGATCTGAACCTGGAGGAGGGAAACTGGGACATCCACGTGATCACAGGAGCACTGAAGCTGTTCTTCCGAGAGCTGCAGGAGCCTCTGTTTCCATACAGTCACTTCAACAGCTTCGTACAGGGCATCAAAATCGCAGACTACCACAGCAGAGTGTCCTACATGAGTGATCTGGTGAAGTCCTTACCAGCACCCAACCACAACACTATGGAGGCGCTCTTCAGCCACTTAAGGAAggtTATCGAGCATGGCGAGGAGAACCGGATGACCGTGCAGAACGTGGCCATCGTCTTTGGCCCAACGCTGTTGAAGCCTGAAATGGAGTCAGCCAACATAACCATGTATATGGTCTTCCAGAACCAGATCATAGAGTTCATCCTCAATGAATTCGAGACCATCTTCCACATGTGATCAGCTGTTAATCAGAGGTCTGCCAGAGGATAATAGATCAGGGATTGGTCAAGAAGCAATCATGAATCTGCCCGGTCCTTATGCATGCAAGAAATGCCAGTGTTGGGGAAGATGAATGATGAAGATGGGCGTTAGAAAGGCTGAGTTAGCGCTATGCAAACGATTCCCTGCTAACTTACCTTTTGTGGCTTCTGATGTTCTAGTGTCAGTTTTGGGCCACTGCTGACCACAGATGACCAGAAAAATGCTTCTCACTGATGACAAATTGAGCGTAATTATTGAACGTGTAATACTGGCTCATACTGAGTGAGATGCTGGCAGAAGAACTGTGTCGtttgcttttaaaaataagataaaatatagCTCTTATGATTAGATATGAGACAATAGAAGAGAATGGGGAGAGATGTAAATAAAGGACGGGCGATAGagaataatgttaatattaattttaatactcCACTGGAAAATGTAGGTGAGGTTTGTCTTACTGATACTCAGGCAGTTTTTCTCTGGCTGTTTTTCTCAGATATGTTCAGATTCAATATGTTCCTTTATGCCCAGCTGTTTGTGAGCCTCTATAAAAACAGTGCAGTTCTTTTTTAAAGGTAGCATTCTGGCCTAAAACtagcttttattatttcagttattGTGTAATATTTTCTATCGTGGTATTTGAGCCCAAAACATGTTTGGTTTAAAAGAATTTGGGCCTTTAAAAGAAGTTGGGCCTTTGAGCCCTTTAGTCAGTAGTCAGCAGTCAGCAGTCGGTAGTTACCTGCAAAATTATTCATAATAAATATGATATTATCAGCCAACAATCAGTGTTGAACAGGCCTTAATACAAAAGTTAATACAGGCATGGGGCCATATTTAATTGATCCATTGGCAAATTGTCAACCACATACTTTTCAGCTTGATTttgggtgtgtcagtgtgtctttgctatcataacaacgggaaaagtacaccttgcacaggttgaaatgcacaaaaggcatgtccTAATTGATAAATTGCAactttttgctattttaacgatctaggtgcaaggcatgaaaatagactgttgaaagggtgtaagatagcaatgaacatcacaACGCATCTTTACCAAGATAGGTTTCCTATTTAATTTTAtcctaattttatatttaattttaaattgctTCCCACCTTGGAATACCACTATCACTAGAAACGCACCCAGcactaggagggtgaaaactagcaaCACATAAAATCAGCCatcgcctcttttccaactgcccCTGCTGCAGCATCACCGCGTAGACAGCGCATTCGGGGAAAGCGTAGCAACTCAGCACTGATGCATCAGCcaacagacgcctgtgctgagCTGATGCCTGTTCTAGCATAGACATATTATACGTAGATGCCTAATTATGGTCTGGAGCGTAATCCAGCGTCGCCGCCATATTGGTTGGGTCTTTTCAATCTAAGCTAGCACCAGAACCTTATAAATGAGGAGTTGAAAGAAAAACAACTTTGAATttcatgttatgttatgtttacaCTATTAGTCAGACTTTATAAAGGTATTATTTCATAAGAACTTACTAATTAGTTTGTATTAACTGAATTTCAGATCTTCAGATAGACCTCACaaagtaaaattttaaatatgaacaatacaaaatatatattttatattataaattatatatttatatatatttgtggaaTTATGTATTGTTCATATTTCAAATGagtaataaaacttttttttgttttttcattaaaatataaaatgaattaatttatacacttattTATACACATGCCATACCAAATGTCTTTATTAAAGTCTTTATTAAAGagaataatagaaaatatttcagcattcaaaaaacatgtatttgttATACGTGACAGTGTCCTTCATCATTAATACATCTCTATCGTTTGTAACACACCAAACTGCATgaaaattgggtaaaaaaaatagttttgagttgtgattattatggttatattaaacaccttcctcagtacaaataaatgcactggggCGCATGGGAGACCCATCCAATATGGTGGCCATGCTGAATGTCATCTGCAATAGGAGACTTCAGTCTATGAGGCGTCTATGTATATTATGTCTATGTCTATGTGTGCTCGGTATGATGGGGACAGAGTGCCATCTTCTAACCCAGAGAGACTAAGGCCAATTGCGCTCGCTCGGACTCTGGCTGATGatgcccccccaaaaaaaacacttgtagTATATTCAGAAGCTGTTTCCACCAAAATGCATTATCAGAAGGAGGCACTAGACTTGCACACCGCTGTAGGAGGAAAGAAAGCATATTTACGACAGTTGTAGAGGGATGTAGAGGGTGGTGCTTTTTGTGTACGTAGGCCAGAGTGCCCCCTTAAGGACAAAgcagttgtttgtttgttttttttgtttctatgtttttaaatgcactgaaaTGTATTCTTGCGAATGCACTGATGATCTCTCTGTGATATTTAGCCTCAGCATAGACAAGTCTGTCCTCCTGAGCTGGAGGCTTTGATTTCAGTGAATGCACAACCCTTGTCCATACAGTGGTTTTTAAGCTGTGAAGATATTCTACTGCATTTAAAACTCATTCTTAGAGACACACAGGTGTAGATCAGATATTGTGGCTATTAATTAAGAAACATTTAGGGCAGTTCTTAGACATTTTCTGCATCTTTCTTCAATATGTCACCTGCAGCATAAACGAGTGCAATACTACAGCTTAACTGTGAATGGACAGCAGTAGTTTACTTGTACAGGGTCTTTAAAGGCTGAGGATGTTTCTTTAGAGTCGTTTAGCACAAACATCCCAACTTCCCTCTGTAAGATTTATTTGCACATAGACGAAGATTAATCCTGAAGGAAATGAAGAGCATAGATGTAAAGAATTGTAAAGCATTAATATTTTATGAACATAAGGCACATTCATATGCTTAATGTTAAGTGGTTGGAAGATGTATATATAGATAAAGGCATATTTATGCTGTAAATTACCCAGAATAAACAAGCTTTTAATAAAGTTAACTGTTTTACATG

Function

GO: NA

KEGG:

id description
K20636 ARHGAP12_27; Rho GTPase-activating protein 12/27

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50683 lncRNA upstream 6374 18589222 ~ 18641095 (+) True G37592
TU50641 lncRNA upstream 174896 18470159 ~ 18472573 (+) True G37557
TU50613 lncRNA upstream 260817 18386414 ~ 18386652 (+) True G37534
TU50569 lncRNA upstream 329517 18313306 ~ 18317952 (+) True G37501
TU50559 lncRNA upstream 358083 18286903 ~ 18289386 (+) True G37492
TU50787 lncRNA downstream 105051 18812739 ~ 18812951 (+) True G37652
XR_002649906.1 lncRNA downstream 255549 18963237 ~ 18964036 (+) True LOC111192409
TU50894 lncRNA downstream 506880 19214568 ~ 19214818 (+) True G37735
TU50915 lncRNA downstream 634411 19342099 ~ 19342794 (+) True G37751
TU50938 lncRNA downstream 766934 19474622 ~ 19476578 (+) True G37767
XM_022669274.1 mRNA upstream 7321 18615248 ~ 18640148 (+) True plekhm1
XM_022669420.1 mRNA upstream 48639 18591905 ~ 18598830 (+) True cd79b
XM_022669273.1 mRNA upstream 63688 18533534 ~ 18583781 (+) True LOC103021833
XM_022669443.1 mRNA upstream 117514 18518908 ~ 18529955 (+) True LOC103021514
XM_007248734.3 mRNA upstream 198266 18420193 ~ 18449203 (+) True LOC103034039
XM_007248736.3 mRNA downstream 1297 18708985 ~ 18716376 (+) True LOC103035226
XM_022669279.1 mRNA downstream 18204 18725892 ~ 18806982 (+) True LOC103023065
XM_022669280.1 mRNA downstream 18204 18725892 ~ 18806982 (+) False LOC103023065
XM_022669281.1 mRNA downstream 54895 18762583 ~ 18806982 (+) False LOC103023065
XM_007248739.3 mRNA downstream 107084 18814772 ~ 18827717 (+) False LOC103035736
TU50609 other upstream 271124 18371378 ~ 18376345 (+) False G37531
TU50610 other upstream 271124 18371378 ~ 18376345 (+) True G37531
TU50452 other upstream 533543 18107564 ~ 18113926 (+) True G37404
TU50442 other upstream 554558 18084916 ~ 18092911 (+) False LOC103046566
TU50074 other upstream 676470 17961940 ~ 17970999 (+) True G37155
trnag-ccc other downstream 189614 18897302 ~ 18897372 (+) True trnag-ccc
TU50913 other downstream 621680 19329368 ~ 19331661 (+) True G37749
TU51016 other downstream 773368 19481056 ~ 19484915 (+) True G37812
TU51173 other downstream 1450192 20157880 ~ 20158339 (+) False G37943
TU51357 other downstream 2311481 21019169 ~ 21030797 (+) True G38079

Expression Profile