RNA id: TU50913


Basic Information

Item Value
RNA id TU50913
length 2122
RNA type TUCP
GC content 0.41
exon number 2
gene id G37749
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 19329368 ~ 19331661 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttctcatctaaaacagtgttttatatattccactttcactttcactcatTCACGGAAATGTCTTTTGGCAGCTGTGAACATCATTCCTCTCCTCCAGCTCCAGAAACACTGTAGTTACGCTGTAGCACCTGTGCAGGAGGACACTGCTagtgaccacacacacacacacaaacataaaagcTCTCTTTttgtcctctctctttctctctctccctcacacacactcacagagacacagagcaaATGCTCACgtccacacaaaacacaaacaagtggAGTGTATTCCAAAGTGGACCCAATTTTGGGGGCAGGAAAGCATCTTACATAGATTACACAGATTGTATTTAGATCTAGTTTTGCTGGAATATATTTACTctggattatatatttttcctgtgGATCAACTTCCCAGCATAACCAGATGATAATtcttttatctaaaaaaaaaaaaaaaaaaaagcatatcaTCCAACTATCCATCTATCAAACACTTGCCTGACTGAAGGGAAATTGAACTAAATTTCGAAAACtttatcttaattaaatgattaGTATGTGAATTCAGAGTGGGTTTGGTATAAAATACTCTGTTCTAGAGAAACTTACCAGGTCAGAACTCTACAAACTCTAAAAGCTCCCTCACAGAAAGTTAATTCACCAAAGAATTCTGGttataaatacactgcctgatgcCTGAcaagatgttttaaaaattgcacATCATTAAAATGCTAAAAGGATGCATGCATGTGTTGTgcggcaatatatatatatacacagcactgtgcaaaagttttaggcaccaaagttaattacactaatccatttaatCCATCTCAGCAATacgagtgtttttacctgaaaaagcaccacatatgatttgaacagacgcaaataaacataaatacagtaaaacgtaacaaagaattctcatttttaactaagtatgttcaATCCTGTGAgtcgagctgaagaacaaagtgtagagatttcagatttctcctggatgatttccctcagccagcatgtgaataatatgttcagttccatcagcagctcacctgatttaccacatttaccagtaatttaccaaaccaggtgttgattaatatgatgagaactagaaattaaactctattaaactcagatgaggaggagagattaggagatgttagGAATGTTTTTTAAGGaaagaaaacagggctgtaaaagtcttttctgctttttgtaaaattgcagtttgtatttattttattgtaacgCAGAatgtagtgttttactgagctaataaacacttactgacCAGATAAGAACtgcactttttctttactgaaattcccacaggtgcctaaaactattcctgaatactgtatatagtcCCAACAGAAAACGCATTTGATCAGATTTGCCACTATTTTACCATCATCAACATTACAAACCTGTGGTTTGTTCTAGAGCCAACAGGAGCAGAACCGATATCAAGGACATGTGAGCGTTCTATGCAACCATCTAAACATGTAGCCAGTCCAGTAGCCCACGCCACTGTTCTTCTCACAAGcatgtcaacacacacacacacacacacacacacacacactgtgatcaCCAGAAAACATAGTGAAAGGGACGTCGTGTCGTGGTGTGAAAGGGAAAGCAAGCACGGACTTAAAAAAGCCATCTACCACAATGTTTCTGACCAAACAACACCCCTCGGCTCAAACCATGCCAACGACTcgcgtaaacacacacacacacacacacacacacacacacacacatatatacactttctcacacacatgTATTAACTCTACACATGGAAAAAAACCTCGGGAAACTGAGGCGTCTGTCTCAGAGCCTGACGGACGTAGTGTTTGGTGTAGGACTCTCTCAGTGGAGAATCCTACCGCTGTAGTGTtgagcaatgtgtgtgtgtgtgtgtgtgtgtgttggggtggggCAGGAAGCTGCTGGGACCTTCCTCCAGGTCGTCCCAGCGTTCAGAACAGGGTGCACCTCTTTCCTCGCTTCTTAACAGGCGGGGGGCAGAGGACGGCCCGGATAGCCTCATCAAACACGGTCTTCAGGCCACGCTGGGTCAGAGCTGAGCATTCCAGATACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50894 lncRNA upstream 114550 19214568 ~ 19214818 (+) True G37735
XR_002649906.1 lncRNA upstream 365332 18963237 ~ 18964036 (+) True LOC111192409
TU50787 lncRNA upstream 516417 18812739 ~ 18812951 (+) True G37652
TU50744 lncRNA upstream 621640 18645635 ~ 18707728 (+) False LOC103022762
TU50743 lncRNA upstream 621687 18645635 ~ 18707681 (+) False LOC103022762
TU50915 lncRNA downstream 10438 19342099 ~ 19342794 (+) True G37751
TU50938 lncRNA downstream 142961 19474622 ~ 19476578 (+) True G37767
TU51021 lncRNA downstream 157300 19488961 ~ 19489738 (+) False LOC103039215
TU51077 lncRNA downstream 325844 19657505 ~ 19658477 (+) True G37862
TU51073 lncRNA downstream 371587 19703248 ~ 19739691 (+) True G37861
XM_022669297.1 mRNA upstream 545 19317712 ~ 19328823 (+) False dcxr
XM_022669296.1 mRNA upstream 545 19317778 ~ 19328823 (+) True dcxr
XM_022669295.1 mRNA upstream 18225 19293604 ~ 19311143 (+) True rfng
XM_022669292.1 mRNA upstream 51681 19249148 ~ 19277687 (+) True LOC103043248
XM_022669293.1 mRNA upstream 51681 19249148 ~ 19277687 (+) False LOC103043248
XM_022669302.1 mRNA downstream 30160 19361821 ~ 19385854 (+) True LOC103044175
XM_022669303.1 mRNA downstream 59781 19391442 ~ 19418752 (+) True fam20a
XM_022669306.1 mRNA downstream 104700 19436361 ~ 19452589 (+) False LOC103038698
XM_022669305.1 mRNA downstream 106383 19438044 ~ 19452589 (+) False LOC103038698
XM_007233563.3 mRNA downstream 106383 19438044 ~ 19452589 (+) False LOC103038698
trnag-ccc other upstream 431996 18897302 ~ 18897372 (+) True trnag-ccc
TU50609 other upstream 953023 18371378 ~ 18376345 (+) False G37531
TU50610 other upstream 953023 18371378 ~ 18376345 (+) True G37531
TU50452 other upstream 1215442 18107564 ~ 18113926 (+) True G37404
TU50442 other upstream 1236457 18084916 ~ 18092911 (+) False LOC103046566
TU51016 other downstream 149395 19481056 ~ 19484915 (+) True G37812
TU51173 other downstream 826219 20157880 ~ 20158339 (+) False G37943
TU51357 other downstream 1687508 21019169 ~ 21030797 (+) True G38079
XR_002649894.1 other downstream 1834907 21166568 ~ 21295290 (+) False plce1
trnar-ccu_1 other downstream 4415808 23747469 ~ 23747541 (+) True trnar-ccu_1

Expression Profile