RNA id: TU51016


Basic Information

Item Value
RNA id TU51016
length 413
RNA type TUCP
GC content 0.52
exon number 6
gene id G37812
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 19481056 ~ 19484915 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGCGGTAGGAGGAACTCTGCGAACCGCGGCGTCCCTGTCAGAACTCCCCGTAGAGCCAGGATGAGCTCCTCCTGCGTGATACCATGAGCATCGTTGGGTGGAGGTGTGAAGTCTATGGGGAAGTAGCAGGATGTGACTTCAAAAAATTCTTCTGTAAACTGACTGAGGTCGTAGCCTCTGTGGATGATGTTTCTTGCTATCTGGAACGCCAGCAGGAGGTTACGAGGATCTCTCTCTCCGTCTACAGCCTGAACAAATCCAAAAACGAAGTCTGGGCCCAAACCCTTCAGctCATCCTCTCTGGACCCCATGAGGCTGATCAGCATGTTGTAGACACACGATCGCTCAGCCAACATCAGGGACTGCACATTTACATCCTGGAAGAGGGATCTCAGGATGGATACTGCAGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50938 lncRNA upstream 4478 19474622 ~ 19476578 (+) True G37767
TU50915 lncRNA upstream 138262 19342099 ~ 19342794 (+) True G37751
TU50894 lncRNA upstream 266238 19214568 ~ 19214818 (+) True G37735
XR_002649906.1 lncRNA upstream 517020 18963237 ~ 18964036 (+) True LOC111192409
TU50787 lncRNA upstream 668105 18812739 ~ 18812951 (+) True G37652
TU51021 lncRNA downstream 4046 19488961 ~ 19489738 (+) False LOC103039215
TU51077 lncRNA downstream 172590 19657505 ~ 19658477 (+) True G37862
TU51073 lncRNA downstream 218333 19703248 ~ 19739691 (+) True G37861
TU51100 lncRNA downstream 255954 19740869 ~ 19741119 (+) True G37882
TU51155 lncRNA downstream 405600 19890515 ~ 19963972 (+) True G37930
XM_022669304.1 mRNA upstream 25703 19443589 ~ 19455353 (+) True LOC103038698
XM_022669306.1 mRNA upstream 28467 19436361 ~ 19452589 (+) False LOC103038698
XM_022669305.1 mRNA upstream 28467 19438044 ~ 19452589 (+) False LOC103038698
XM_007233563.3 mRNA upstream 28467 19438044 ~ 19452589 (+) False LOC103038698
XM_022669303.1 mRNA upstream 62304 19391442 ~ 19418752 (+) True fam20a
XM_022669308.1 mRNA downstream 3984 19488899 ~ 19511441 (+) True LOC103039215
XM_015601372.2 mRNA downstream 223750 19708665 ~ 19734677 (+) False LOC103040580
XM_007233568.3 mRNA downstream 223751 19708666 ~ 19734677 (+) True LOC103040580
XM_007233567.3 mRNA downstream 223751 19708666 ~ 19734677 (+) False LOC103040580
XM_007233569.3 mRNA downstream 223751 19708666 ~ 19732885 (+) False LOC103040580
TU50913 other upstream 149395 19329368 ~ 19331661 (+) True G37749
trnag-ccc other upstream 583684 18897302 ~ 18897372 (+) True trnag-ccc
TU50609 other upstream 1104711 18371378 ~ 18376345 (+) False G37531
TU50610 other upstream 1104711 18371378 ~ 18376345 (+) True G37531
TU50452 other upstream 1367130 18107564 ~ 18113926 (+) True G37404
TU51173 other downstream 672965 20157880 ~ 20158339 (+) False G37943
TU51357 other downstream 1534254 21019169 ~ 21030797 (+) True G38079
XR_002649894.1 other downstream 1681653 21166568 ~ 21295290 (+) False plce1
trnar-ccu_1 other downstream 4262554 23747469 ~ 23747541 (+) True trnar-ccu_1
trnar-ccu_2 other downstream 4262656 23747571 ~ 23747643 (+) True trnar-ccu_2

Expression Profile