RNA id: TU51038


Basic Information

Item Value
RNA id TU51038
length 1484
lncRNA type sense_over
GC content 0.35
exon number 2
gene id LOC103045068
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 19544225 ~ 19601284 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttaagagtttaaaaaaaaaaacagtaaaattaaagcagtttacGTCATTATTGACTGTTAGTTGCTTGGCTTTTTGTTCCCAAAGTGAGTAAGTGGGTTGGATTAAACAGTTCagtgcagtttagtttagttcagttcacATTCTCATTTAgttgtaatttattttgttgtcaCGAAGCCGCTTTAGAGAAGTTTGGGCAATGGAGTCAAGCTTTGGCTAGTTTTGGATGAACCAAAGGGAAGAGTTTTGGACCATCGTTTGCTACGTTGTCCcgttagaaaaagaaaaaacggtGGTTTGTCTCAGGTTAGCCTGTTGCAAGAATAATGTAAGTCGCAaagttttgatattttatttgtgtcaAAATGTGTTAGTCTGATGCTTTTGGTACGTTGTAGAGTTCAGCAGCTGGATAAAATGTGTACGTTTTACAAGtctgtttattttacacaatgtacaaaattgtattttatacaaGTTACAGGataattaaagtaataattaGTAAAATACACAATTATACAAAGATGcacattttacagattttaccaaattgtgcATTGTATACAAATTttgcaaattaaaaaatgttggctaACAAAAGTACAATTTGACAGTTTGAAGTTTTGCTAAATTGTAGATTACAATTGTGTAAAagtctagaaaaaaaaaagttaaaattgttacatattttaaaattttttaaGATTTGTTGATTAAGTGACAGTTGAGAATCTGCAGGTGTGGAAAGGTGTGGAGTCCCCAGATGATCCAGTTTCagctttgtttgctttttttttccttcaataGCAATTCCTCTTAATGTACACAGTCAGGTCAATATTTTTCTCATGATAAATGTTCTATATTCCCatgactgtactgtatgttgatACTCGTCCTTCCTTCGAGCTTCTTTTTGTAACGTCACCAAGTACACATCATGACTGCAGGGCAGTTCACAGTATCTAATTTATTATCCCCCGGCTACAGTACGTACAGTAAGGGACTTGAATACGACAAGGTGTCCTCTGTAAACAGCAGGACACTGTGCATGAACCAATCCAAAGAAATCTTTTCTACTGTTCTTTTCTCTCCGTTTATTTCATTGcagtttgttttacactttttttattgtatttccccccccccccacatgtGATTGACACTGTCCGCTGTCGATTTACACTATCCGTCAGTCAGTGGTTAGATTTCCACGTCCTGCCAAAGAAATCATTGACTATAATTAACTAAATATGCAGTGGAATGTAAAATGACTACGAACCTTTGCTCTTGTTTACTGCCaaaccatgttgccagttatttCGTTGTAACCCTTATTGGTTTTTCAGACACTCAGTCTAATTATGTGTGAGCTGTATTATTGGATACAGGAACGCTGTAACGAGTCATTGTCTCGCATTGTCTTTTAATTTAGTATCGCCTGTTAACAACAGTATTGAAGCAACTTGTGAAAGGCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51041 lncRNA downstream 22889 19521071 ~ 19521393 (-) True G37834
TU51035 lncRNA downstream 29679 19509466 ~ 19514603 (-) True G37828
TU51036 lncRNA downstream 35700 19489836 ~ 19508582 (-) True G37829
TU50948 lncRNA downstream 191805 19275151 ~ 19352477 (-) False G37771
TU50947 lncRNA downstream 263443 19275151 ~ 19280839 (-) False G37771
TU51113 lncRNA upstream 108490 19657519 ~ 19658113 (-) True G37895
TU51140 lncRNA upstream 227868 19776897 ~ 19792611 (-) True G37916
TU51111 lncRNA upstream 249548 19798577 ~ 19799242 (-) True G37893
TU51146 lncRNA upstream 251531 19800560 ~ 19800813 (-) True G37921
TU51145 lncRNA upstream 251919 19800948 ~ 19801247 (-) True G37920
XM_022669307.1 mRNA downstream 57035 19457300 ~ 19487247 (-) True mms19
XM_007233562.3 mRNA downstream 107998 19422900 ~ 19436284 (-) True LOC103038385
XM_022669301.1 mRNA downstream 190493 19342029 ~ 19353789 (-) False lrrc45
XM_007233565.3 mRNA upstream 55212 19604241 ~ 19606942 (-) True rbp3
XM_007233566.2 mRNA upstream 67382 19616411 ~ 19623377 (-) True LOC103040263
XM_007233583.3 mRNA upstream 78571 19627600 ~ 19632328 (-) True LOC103045380
XM_022669313.1 mRNA upstream 129420 19678449 ~ 19708607 (-) False frmpd2
XM_022669318.1 mRNA upstream 129420 19678449 ~ 19708607 (-) False frmpd2
TU50715 other downstream 909184 18633578 ~ 18635098 (-) True G37616
TU50696 other downstream 971106 18572691 ~ 18573176 (-) True G37603
XR_002649891.1 other downstream 1226325 18282490 ~ 18317957 (-) False LOC103047479
XR_002649889.1 other downstream 1748296 17789951 ~ 17795986 (-) True vps25
XR_002649886.1 other downstream 1839259 17692498 ~ 17705023 (-) True cntd1
TU51149 other upstream 269239 19818268 ~ 19825652 (-) True c4h10orf128
TU51712 other upstream 2324291 21873320 ~ 21878377 (-) True G38338
TU52138 other upstream 3916190 23465219 ~ 23510619 (-) False LOC111192393
TU52261 other upstream 4134097 23683126 ~ 23692337 (-) True fam13c
TU52289 other upstream 4286051 23835080 ~ 23960895 (-) False G38791

Expression Profile