RNA id: XM_022669309.1


Basic Information

Item Value
RNA id XM_022669309.1
length 4244
RNA type mRNA
GC content 0.45
exon number 18
gene id LOC103045068
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 19544225 ~ 19601284 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacacacacacacacacacacacacacacacacagtctcctcCACAGCAGGCTGCAGACCTCCGGCTCGCGCTAACTCTCCCAGTCCAGCCAGCTCTCACGCGGCGCGTCTTACTGGTTTTTGGACTAAATCTGAACTGGATTCAGACAGGCTGCCCAGAGACTGGAGGATCGCGCGCGAACACGGGTCCAAAAAAGACCCAAAGAGAAGTCCGGCCGAGCTGCTCTTTGTGTTAATGCGCCCTGGAGTCCAGCGCGCGCTGCGGATAATGCTGTGAACGGGCTCTGGTGGTTCTGATGCGCGTTCTGTTGGGTTCTGTTGGCTTCTGCGCGGTTCTACACGTCTCTATTGGGTTCTGCTGGGGTGTATTGTGTCCTGTTGGGTTCTGTGAGTGAGGACTGAGGATGGCGAGTTTTGGAAAGGGGGCTCTGCTGTTCCTCGCGCTCTCGGGATGTTTGGTTCTGTGCGCGTTCTCGGAGACAGCGGCGGAGGCGCACGAGGAGGAGGATCAGAGATCGTGCCAGGGTGCCTTCGATCTGTACTTCGTTCTAGATAAGTCAGGAAGTGTGAAGCACCACTGGCATGAGATCTACTCTTTTGTTGAGAGTCTGGCAGAGAAGTTTATCAGCCCGCTGTTACGGATGTCCTTCATTGTGTTCTCGTCCAGAGGAAACACCATAATGAAGCTGACTGAAGATAGGGAACGCATCACAAAAGGCCTGAACGTTTTAAGGAGAGAGATCCCAGGAGGAGACACGTTTATGCACCTCGGCCTGGAGAAGGCTAATGAACAGATCCATCAGGAGAATTTCGGTAAAGCCAGTGTGATCATTGCTCTGACGGACGGGGAGCTGAATGAACAGCAGCTGGTTGCAGCACAACAAGAGGCTGCCAAAGCAAGAGGGCTGGGTGCTATTGTGTACTGCGTCGGAGTTAAAGACTTCAACGAGACACAGCTGGCCACCATAGCGGACACCATCGAGCACGTGTTTCCTGTGACGGGAGGATTCCAGGCTCTTAGAGGAGTGATTGACTCGATCATCAAGAAGTCCTGTATCGAGATCTTGGCAGCTGAGCCATCGAGCGTCTGCGCAGGAGAGTCCTTTCAAGTGGTGGTCAGAGGAAACGGCTTCCTCCACGCCAGGAAGATAGACCAGGTGATGTGCAGCTTCAAGGTCAATGACACGGTCACCTTAAATGTGAAGCCTGATGGTATAGAAGACACGTATCTACTGTGTCCGGCACCGGTCATAGACGAAGTTGGGAAGGTGGTTTACCTGCAGGTCAGCATGAACGAGGGTCTGTCGTTCATCACCAGCTCAGTACACATCACCACCACCGAATGTTTTGACGGGACTATTCTGCTGATCACCCTGCTGGTCCTCTTCTTGTTATTGGCTCTGCTGTTCATGTGGTGGTTCTGGCCGCTCTGCTGCACAGTAGTCATAAGggagcctcctcctcctccaccaccagagCCAGAGTCTGATGATGAAGACGGCATGCCCAAGAAGAAATGGCCTACTGTGGACGCGTCATACTACGGAGGACGAGGAGTCGGAGGGATAAAACGAATGGAgGTGCGCTGGGGCGGGAAAGGCTCGACTGAAGAAGGAGCCAAGCTGGAGAAACCCAAAAACGCAGTGGTGAAAATGCCTGAGCAGGAGTTCGAGCCGTTTGAGCCCAAGCCCAAAAAACACGGGAGCAAGAGAACCGCCCAGGACAGGAAGTGGTATTCTCCAATCAGGGGTAAACTGGACGCGATCTGGGCTCTGTTTCGTCGTGGTTATGACCAGGTTTCGCTGATGAGACCACAACCAGGAGATCATGGTCGATGCATCAACTTTACGCGGGTGAAAGAAGAGGCAGCGAAAGCTCCGCCCCGTACCCAGTGCCCAGCACCGCCTCCGCCGGACTACCGCCCAGCCCCCAACCCCATGAGTCCACCTCCACAATCCCCTCCGAAGGGGCCGCCCCAGGCCCAACTGCCACCGGGACCGCCAGGACCACCCCCGGCCCGAGTGCCACCCGGTCCTCCCTGCCCACCTCCCGCCCGGCCCCCTCCCAAACCCTGAGGCCTGGCAGCACGAGCACCAGCACAGTTCAATGCAGTTCATTTATCCAGCCAAAATATGCTTCTCTCACCGTAGAAAACAAACTCAAACCGTGATATTTATCAGTGTCAGGGTTTGGTAGAAGACTCCGGTATGTGGTTTGTTGCTggacagcaaaaataaataaatattgtaacaATATCAAAGAAAATAACAACTGCAGTAAGGGAAAGATGCTAATATCAACTACTGAATATACCACATGCGGCAACGTCAATTAAAGCCAAAATTAGCATAGTATCATCTGGAAAATATTCTGAGTGTCTGAGTCTGACTTCTTCAGTTTAATGTAGGTAACAAGCAATGCAGCCATGAACATTATagattagcatgatgctaactgcatGCCTGAGTCAAGCCTTTGCCTCAAACCAGCGGTAGCCTATGTGTAATGATTTACGCATGcagttagcatgatgctaattaATGTTCTGTTTagcttccattacttgttagctacatttgcTGTATAGCTTCAGTGATAAAATTAAAGGAGCAGAAACTTCAGATACTGAAAATATCAGCGATGATTGACTACAATTGAAGTCAGAAAGGGAAATTGTGTTAATTTGCTTTTTTACTTTAAGAACcgtttaagagttaaaaaaaaacagtaaaattaaagcagtttacGTCATTATTGACTGTTAGTTGCTTGGCTTTTTGTTCCCAAAGTGAGTAAGTGGGTTGGATTAAACAGTTCagtgcagtttagtttagttcagttcacATTCTCATTTAgttgtaatttattttgttgtcaCGAAGCCGCTTTAGAGAAGTTTGGGCAATGGAGTCAAGCTTTGGCTAGTTTTGGATGAACCAAAGGGAAGAGTTTTGGACCATCGTTTGCTACGTTGTCCcgttagaaaaagaaaaaacggtGGTTTGTCTCAGGTTAGCCTGTTGCAAGAATAATGTAAGTCGCAaagttttgatattttatttgtgtcaAAATGTGTTAGTCTGATGCTTTTGGTACGTTGTAGAGTTCAGCAGCTGGATAAAATGTGTACGTTTTACAAGtctgtttattttacacaatgtacaaaattgtattttatacaaGTTACAGGataattaaagtaataattaGTAAAATACACAATTATACAAAGATGcacattttacagattttaccaaattgtgcATTGTATACAAATTttgcaaattaaaaaatgttggctaACAAAAGTACAATTTGACAGTTTGAAGTTTTGCTAAATTGTAGATTACAATTGTGTAAAagtctagaaaaaaaaaagttaaaattgttacatattttaaaattttttaaGATTTGTTGATTAAGTGACAGTTGAGAATCTGCAGGTGTGGAAAGGTGTGGAGTCCCCAGATGATCCAGTTTCagctttgtttgctttttttttccttcaataGCAATTCCTCTTAATGTACACAGTCAGGTCAATATTTTTCTCATGATAAATGTTCTATATTCCCatgactgtactgtatgttgatACTCGTCCTTCCTTCGAGCTTCTTTTTGTAACGTCACCAAGTACACATCATGACTGCAGGGCAGTTCACAGTATCTAATTTATTATCCCCCGGCTACAGTACGTACAGTAAGGGACTTGAATACGACAAGGTGTCCTCTGTAAACAGCAGGACACTGTGCATGAACCAATCCAAAGAAATCTTTTCTACTGTTCTTTTCTCTCCGTTTATTTCATTGcagtttgttttacactttttttattgtatttccccccccccccacatgtGATTGACACTGTCCGCTGTCGATTTACACTATCCGTCAGTCAGTGGTTAGATTTCCACGTCCTGCCAAAGAAATCATTGACTATAATTAACTAAATATGCAGTGGAATGTAAAATGACTACGAACCTTTGCTCTTGTTTACTGCCaaaccatgttgccagttatttCGTTGTAACCCTTATTGGTTTTTCAGACACTCAGTCTAATTATGTGTGAGCTGTATTATTGGATACAGGAACGCTGTAACGAGTCATTGTCTCGCATTGTCTTTTAATTTAGTATCGCCTGTTAACAACAGTATTGAAGCAACTTGTGAAAGGCGCATAAACTGTTCtccttttttatacatttattaataaaagtcaACTTTCGAGCTTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51041 lncRNA downstream 22832 19521071 ~ 19521393 (-) True G37834
TU51035 lncRNA downstream 29622 19509466 ~ 19514603 (-) True G37828
TU51036 lncRNA downstream 35643 19489836 ~ 19508582 (-) True G37829
TU50952 lncRNA downstream 163293 19261479 ~ 19380932 (-) True G37775
TU50948 lncRNA downstream 191748 19275151 ~ 19352477 (-) False G37771
TU51113 lncRNA upstream 56235 19657519 ~ 19658113 (-) True G37895
TU51140 lncRNA upstream 175613 19776897 ~ 19792611 (-) True G37916
TU51111 lncRNA upstream 197293 19798577 ~ 19799242 (-) True G37893
TU51146 lncRNA upstream 199276 19800560 ~ 19800813 (-) True G37921
TU51145 lncRNA upstream 199664 19800948 ~ 19801247 (-) True G37920
XM_022669307.1 mRNA downstream 56978 19457300 ~ 19487247 (-) True mms19
XM_007233562.3 mRNA downstream 107941 19422900 ~ 19436284 (-) True LOC103038385
XM_022669301.1 mRNA downstream 190436 19342029 ~ 19353789 (-) False lrrc45
XM_022669300.1 mRNA downstream 190436 19342029 ~ 19353789 (-) False lrrc45
XM_022669299.1 mRNA downstream 190436 19342029 ~ 19353789 (-) True lrrc45
XM_007233565.3 mRNA upstream 2957 19604241 ~ 19606942 (-) True rbp3
XM_007233566.2 mRNA upstream 15127 19616411 ~ 19623377 (-) True LOC103040263
XM_007233583.3 mRNA upstream 26316 19627600 ~ 19632328 (-) True LOC103045380
XM_022669313.1 mRNA upstream 77165 19678449 ~ 19708607 (-) False frmpd2
XM_022669318.1 mRNA upstream 77165 19678449 ~ 19708607 (-) False frmpd2
TU50715 other downstream 909127 18633578 ~ 18635098 (-) True G37616
TU50696 other downstream 971049 18572691 ~ 18573176 (-) True G37603
XR_002649891.1 other downstream 1226268 18282490 ~ 18317957 (-) False LOC103047479
XR_002649889.1 other downstream 1748239 17789951 ~ 17795986 (-) True vps25
XR_002649886.1 other downstream 1839202 17692498 ~ 17705023 (-) True cntd1
TU51149 other upstream 216984 19818268 ~ 19825652 (-) True c4h10orf128
TU51712 other upstream 2272036 21873320 ~ 21878377 (-) True G38338
TU52138 other upstream 3863935 23465219 ~ 23510619 (-) False LOC111192393
TU52261 other upstream 4081842 23683126 ~ 23692337 (-) True fam13c
TU52289 other upstream 4233796 23835080 ~ 23960895 (-) False G38791

Expression Profile