RNA id: TU51167


Basic Information

Item Value
RNA id TU51167
length 402
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G37940
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 20048414 ~ 20048815 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGATGAGGTAAGAAGTCTCCCTCATCACCAAAGCTGTTGCCAGAGATTTAATGTTCTGTAAAGACAATTGTTTTAACAAACACATggagatacttacctgagaaGGGGGTTCCAAAGGACTGGCAGCCATTACAGTTCCTCTTCTTGTACTAGCCAGAAGGGCCCATGGCAGTGCAGGAGAGAGGGGAGCTGGAGTGAAGAacctgtaaaagaaaaagactAAGTTAATTGAAAGGAATACTTACCGGTAGATGTTGTGATGTAATGGCCATTTtaaaactgtgtgagaatatgtGCACATTGtagaaaatgttaatgtttgtaTGCATTTAATTAGGATGTTTTAACTCACCTGCTGAGATTTGGTTTAGCCCGGGGCGGGGCTTCCAGTATTTAAAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51165 lncRNA upstream 21254 20026925 ~ 20027160 (+) True G37938
TU51164 lncRNA upstream 25068 20023141 ~ 20023346 (+) True G37937
TU51162 lncRNA upstream 42287 20005912 ~ 20006127 (+) True G37935
TU51155 lncRNA upstream 84442 19890515 ~ 19963972 (+) True G37930
TU51156 lncRNA upstream 114997 19890515 ~ 19933417 (+) False G37930
TU51177 lncRNA downstream 50304 20099119 ~ 20099850 (+) True G37945
TU51170 lncRNA downstream 106913 20155728 ~ 20158339 (+) True G37943
TU51185 lncRNA downstream 132761 20181576 ~ 20181834 (+) True G37950
TU51187 lncRNA downstream 142597 20191412 ~ 20191686 (+) True G37952
TU51204 lncRNA downstream 368058 20416873 ~ 20417180 (+) True G37969
XM_022669324.1 mRNA upstream 199094 19840306 ~ 19849320 (+) True LOC103042203
XM_015601372.2 mRNA upstream 313737 19708665 ~ 19734677 (+) False LOC103040580
XM_007240489.3 mRNA downstream 245424 20294239 ~ 20299561 (+) True LOC103045523
XM_007232849.3 mRNA downstream 640851 20689666 ~ 20691726 (+) True LOC103030679
XM_007232850.3 mRNA downstream 653445 20702260 ~ 20708857 (+) True LOC103031004
XM_022669423.1 mRNA downstream 676236 20725051 ~ 20733671 (+) True tnfrsf13b
XM_022669328.1 mRNA downstream 751305 20800120 ~ 20811142 (+) True nt5m
TU51016 other upstream 563499 19481056 ~ 19484915 (+) True G37812
TU50913 other upstream 716753 19329368 ~ 19331661 (+) True G37749
trnag-ccc other upstream 1151042 18897302 ~ 18897372 (+) True trnag-ccc
TU50609 other upstream 1672069 18371378 ~ 18376345 (+) False G37531
TU51173 other downstream 109065 20157880 ~ 20158339 (+) False G37943
TU51357 other downstream 970354 21019169 ~ 21030797 (+) True G38079
XR_002649894.1 other downstream 1117753 21166568 ~ 21295290 (+) False plce1
trnar-ccu_1 other downstream 3698654 23747469 ~ 23747541 (+) True trnar-ccu_1
trnar-ccu_2 other downstream 3698756 23747571 ~ 23747643 (+) True trnar-ccu_2

Expression Profile