RNA id: TU51212


Basic Information

Item Value
RNA id TU51212
length 1403
lncRNA type inter_gene
GC content 0.33
exon number 3
gene id G37974
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 20509679 ~ 20511186 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTTCTGCAGTTTAAACACAATAATACATTCATACAGTAATTTTAAtcaagcaacacacacacacacgcacacactcaacCTATTGACCAACCTGCAGTTTACCCTCATAAACCTTTTAATATCCGTTTAAATGTTACAAAGTGTTTTTGTAAAGAGACAGTCACACGTCAGATGTGGAGATCCTACACTACTCAAATATGTCTTCATTTGAGATGTAAATAACAACAGTATTGAAATATCTGTGTGAATCTACCTAACCATGGTTTGACGAAAAAAATTGCAGACCGACCAAGTGccagaaaacagttaaaaacttaaaaaatgaaaagaaaaatatatattatctaaAATGTCTTTgagctgtaaataaaatattttagatgACATCTTTTTGTAAATTAATAGAATAGAAATTTTGATTCTTAAGTGGATAAAttaagtcagtcagtcagtaaacAGTGAGTAGTGGTTGATGGTGAGAATCATTTACAGCATCCAAAATGCAGATGATCAGGACTAGCTTTGTGCTTGTGACGGATGAAAGCAGTAACAGCCCTCTAATTGATACAGAATATAGTGTGTAATGTAGCATCAGGCTACATACAGTACACAGGCACTTCCTAacataattgtgtaaaaaggAAATGTAATGTGTTGTGTGAGGGCACCTACatctacacctacacctacttATCATACCATCAATTATCTATTATTTGTTGCTCTGCTTAGTTTCAGTAAAACTAGTTTAATTtagattaaaggagaaatccggggGGAAACCTGTATGTGACAATAGTACCTCAAAGAGATCCCAACATTAAAACATCACAAAAAGGTAGAAGAAGGTTTAGAAGGTTTAATTGCAATTACAGACTACTTACTCCCTAAATAGTGTACTGTACAAGTCAGGAAATTGCAGATTGTAAGTcgaaattatattatttaatataatatgattagTCCATAATcacattatatatttgtaaaagaACAGTATtctgtatacatttatttagacAGTAAAATTTGAAATCTAGTATATCTGTTGTTAATTGTTGTAGCTTTATGACCTTATGTTAAAGTTTACTTTATAGGGAGTAAGGGTGTCATGCGTTGTCATGTTAGTTACATTATGCAAAGTTACATTATCTGCTGTGCTATGTTGTCACAGTTGTGGACCAAACAATGAtccttcagcagcagcagcagaagagaaAAGTGTACATGAGGAGTGGCACAGTGAGTGTAAATTTGCaaatgttaaagaaaatatattttacagcagAGCTGAAAGAGAGCAGAGAGGTATGTTACATTCCTCTTTTATGTAGCCATTTTATATAGTTTGTATTGGTGCGTCCAAGTCTCTTCATGTTCCAGAAAGAAGAGTGAACTAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51204 lncRNA upstream 92499 20416873 ~ 20417180 (+) True G37969
TU51187 lncRNA upstream 317993 20191412 ~ 20191686 (+) True G37952
TU51185 lncRNA upstream 327845 20181576 ~ 20181834 (+) True G37950
TU51170 lncRNA upstream 351340 20155728 ~ 20158339 (+) True G37943
TU51177 lncRNA upstream 409829 20099119 ~ 20099850 (+) True G37945
TU51267 lncRNA downstream 272745 20783931 ~ 20790126 (+) True G38010
TU51327 lncRNA downstream 363610 20874796 ~ 20875276 (+) True G38059
TU51331 lncRNA downstream 391891 20903077 ~ 20981763 (+) True G38062
TU51364 lncRNA downstream 533326 21044512 ~ 21048104 (+) False G38081
TU51365 lncRNA downstream 533326 21044512 ~ 21083648 (+) False G38081
XM_007240489.3 mRNA upstream 210118 20294239 ~ 20299561 (+) True LOC103045523
XM_022669324.1 mRNA upstream 660359 19840306 ~ 19849320 (+) True LOC103042203
XM_007233568.3 mRNA upstream 775002 19708666 ~ 19734677 (+) True LOC103040580
XM_007232849.3 mRNA downstream 178480 20689666 ~ 20691726 (+) True LOC103030679
XM_007232850.3 mRNA downstream 191074 20702260 ~ 20708857 (+) True LOC103031004
XM_022669423.1 mRNA downstream 213865 20725051 ~ 20733671 (+) True tnfrsf13b
XM_022669328.1 mRNA downstream 288934 20800120 ~ 20811142 (+) True nt5m
XM_007232853.2 mRNA downstream 351463 20862649 ~ 20865785 (+) True med9
TU51173 other upstream 351340 20157880 ~ 20158339 (+) False G37943
TU51016 other upstream 1024764 19481056 ~ 19484915 (+) True G37812
TU50913 other upstream 1178018 19329368 ~ 19331661 (+) True G37749
trnag-ccc other upstream 1612307 18897302 ~ 18897372 (+) True trnag-ccc
TU50610 other upstream 2133334 18371378 ~ 18376345 (+) True G37531
TU51357 other downstream 507983 21019169 ~ 21030797 (+) True G38079
XR_002649894.1 other downstream 655382 21166568 ~ 21295290 (+) False plce1
trnar-ccu_1 other downstream 3236283 23747469 ~ 23747541 (+) True trnar-ccu_1
trnar-ccu_2 other downstream 3236385 23747571 ~ 23747643 (+) True trnar-ccu_2
trnar-ccu_3 other downstream 3236487 23747673 ~ 23747745 (+) True trnar-ccu_3

Expression Profile