RNA id: TU51327


Basic Information

Item Value
RNA id TU51327
length 481
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G38059
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 20874796 ~ 20875276 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtgtcaagtttaataaatacagtggTTTCAGAACAATTCTATTggatttaatttgtaaataaagAACATCACTATCTAAACTAAACCCCCAGACTCTAGAACAGAAACGTCAGAACAGAAGCTCTTCACTGAAGAACTCAAGAACGTGCAGAGTGTATCTGTTCAAAACAACAAAAGCCTTTAACAGTAGTTCATGTAAACCATCATCCTCATATCTTAGGAATTAAGATATTAAGAATTATAAATCACAGCTGTTGGACTAAACcataatattgtttataaaagtttggtaacactttacttgtaTGGTCCATTGTAGAGGCCTCATACAGAACACACTCAATTAACATCTTAAATTCAACTGAACTCTAAAGTGAAAGAAAAGGATTctgtattgaatgtaaccctacacccaactctaatccaaactctaatccaaactctaatcttaacatttaagGACTGGGTTTATGGTTGGATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51267 lncRNA upstream 84670 20783931 ~ 20790126 (+) True G38010
TU51208 lncRNA upstream 329159 20445849 ~ 20545637 (+) True G37972
TU51212 lncRNA upstream 363610 20509679 ~ 20511186 (+) False G37974
TU51221 lncRNA upstream 363610 20509679 ~ 20511186 (+) True G37974
TU51204 lncRNA upstream 457616 20416873 ~ 20417180 (+) True G37969
TU51331 lncRNA downstream 27801 20903077 ~ 20981763 (+) True G38062
TU51364 lncRNA downstream 169236 21044512 ~ 21048104 (+) False G38081
TU51365 lncRNA downstream 169236 21044512 ~ 21083648 (+) False G38081
TU51366 lncRNA downstream 169236 21044512 ~ 21048104 (+) False G38081
TU51362 lncRNA downstream 169268 21044544 ~ 21048104 (+) True G38081
XM_007232853.2 mRNA upstream 9011 20862649 ~ 20865785 (+) True med9
XM_022669328.1 mRNA upstream 63654 20800120 ~ 20811142 (+) True nt5m
XM_022669423.1 mRNA upstream 141125 20725051 ~ 20733671 (+) True tnfrsf13b
XM_007232850.3 mRNA upstream 165939 20702260 ~ 20708857 (+) True LOC103031004
XM_007232849.3 mRNA upstream 183070 20689666 ~ 20691726 (+) True LOC103030679
XM_007232858.3 mRNA downstream 115705 20990981 ~ 20996657 (+) True LOC103033426
XM_007232859.3 mRNA downstream 122839 20998115 ~ 21002011 (+) True emc9
XM_007232861.3 mRNA downstream 156626 21031902 ~ 21043890 (+) True cep55
XM_022669333.1 mRNA downstream 180292 21055568 ~ 21077901 (+) True pde6c
XM_022669334.1 mRNA downstream 233804 21109080 ~ 21128764 (+) True lgi1
TU51173 other upstream 716457 20157880 ~ 20158339 (+) False G37943
TU51016 other upstream 1389881 19481056 ~ 19484915 (+) True G37812
TU50913 other upstream 1543135 19329368 ~ 19331661 (+) True G37749
trnag-ccc other upstream 1977424 18897302 ~ 18897372 (+) True trnag-ccc
TU50610 other upstream 2498451 18371378 ~ 18376345 (+) True G37531
TU51357 other downstream 143893 21019169 ~ 21030797 (+) True G38079
XR_002649894.1 other downstream 291292 21166568 ~ 21295290 (+) False plce1
trnar-ccu_1 other downstream 2872193 23747469 ~ 23747541 (+) True trnar-ccu_1
trnar-ccu_2 other downstream 2872295 23747571 ~ 23747643 (+) True trnar-ccu_2
trnar-ccu_3 other downstream 2872397 23747673 ~ 23747745 (+) True trnar-ccu_3

Expression Profile