RNA id: TU51357


Basic Information

Item Value
RNA id TU51357
length 1649
RNA type TUCP
GC content 0.48
exon number 9
gene id G38079
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 21019169 ~ 21030797 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tacatgtatccacagtttaaaaagtaaaatgtgtttatttaaaaacaaaaaagccaCACAAgcatcaaaaacacaaaaacagaccAAGTAGTCAGCTCTGGAGCTCCATTACTTCTAttcacagaaagaaaaaaagcataCATGATCACTTCCCCATTGCACTGAGAATGTTGGCCTTAATAAAAGATGAGAAACGCTTCGCTGTAATGCCTTCAATTTTCTTTAAGTCATCCACCTGTGTGAAATCTCCATTAACTTCTCTCCAGCCCAGAATGAGTTTGGCCTTTTTATCACCAATGAGCTGCAGGCTTTTCAGCTCTTTCAGTGATCCAGAGTTCAGCGTGTCAAGGATTTTCTTTTTGGACTGCTCTAGTAGTGAGGAGTCTAGTCGCGACTCCCAGTTCAACTCTCCATCACAGGAGGGCTCCGGACCACTGTTCTCTTTACCCTTTATgacctcctgcagtgtttttttgtccttgctcaatttttcttttgatggTTTCCAAACCACAGCACACTGCTGCAACGGCTGCACATGACTCACCTGTAATGGAATAACAACTGCCTGCTGTTTCCTGGGTTTGGCTGCAGTTGACTGCTTCCTGTTTAAAAGGTTCAGGTCTGACCTGAAGAGAGGGGCACCACCGTCTTTCTCATCCTTCGGTTTATCCTGACCACCCGTAAGTTTATTTAACATGTCTGCCTTCTCTTCCAACTCCTTCTGCTTCTCCTTTGCGGGACTGCGCGACTGTCTTCAGCAAATtgagtctctctttctctggggAGCCCAACATCATTTTCTCCAGAGCCAGAAGCCTGTCCAACACTGACGTATCGGCCGGGCTGTGTGGCTGTGTTTGTGGTGATGGTATTTCCCCTTTTTTATTCTCCTTCAACCTCTTATTCTGTGGTTCTCCTGGTCCCCCAGCCTCCTGCTCTTCTCTTGACCTTTTACCATTTGTGGGAGCCGCCACGGTCTCTCTGACGAACGGTCGGTTGACAATTTGCTTGGACTTGGCAGCGAAATTGAGGGCGGTGAAAGTATCGAAGTAGTACTTGTACTCAGGAGCGATGTTTGTAATCATCACTGAATGGGCGGAGCCACCCAGCGAATCCTGTAGCAGGCGGGTGAGTTTACTGTCTCTGTACGGCACACGGCCCACGGTCCCAGCGTTTAAACTGTCCACCACTTTGCTGAGAGTGAAGAGGGACAGGTTGATGGCACCGCTCTCCTTCAGGCGTATACCCTGATTACCTGTGCGCCGGTTGTCCTCTGAGCCGGCCAGGTCAACTAGGTAGAGTTTCCCAGTCAGCTGTCGATGAGGTGGAACACGCTGAGACTTCACCACCTTAAAGAATAGACAAACGAGTACAACAaggaatcCCCCctctcactagtgatgccccaacaccaggagggtaaagactagcacatgcctcctttagccaccttctctttttgaactgctgctgatgcagcattgccaagtggCATCACAGCgtgttcggaggaaagcgcagcgacttggttccgatacatcagctcacagatgccttgtgttgatcaacatcaccctaggaatgatgagggaaaagagcaccatctacccacccagagagattaaagccaattgtgctccagcagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51331 lncRNA upstream 37406 20903077 ~ 20981763 (+) True G38062
TU51327 lncRNA upstream 143893 20874796 ~ 20875276 (+) True G38059
TU51267 lncRNA upstream 229043 20783931 ~ 20790126 (+) True G38010
TU51208 lncRNA upstream 473532 20445849 ~ 20545637 (+) True G37972
TU51212 lncRNA upstream 507983 20509679 ~ 20511186 (+) False G37974
TU51364 lncRNA downstream 13715 21044512 ~ 21048104 (+) False G38081
TU51365 lncRNA downstream 13715 21044512 ~ 21083648 (+) False G38081
TU51366 lncRNA downstream 13715 21044512 ~ 21048104 (+) False G38081
TU51362 lncRNA downstream 13747 21044544 ~ 21048104 (+) True G38081
TU51377 lncRNA downstream 87432 21118229 ~ 21128741 (+) False lgi1
XM_007232859.3 mRNA upstream 17158 20998115 ~ 21002011 (+) True emc9
XM_007232858.3 mRNA upstream 22512 20990981 ~ 20996657 (+) True LOC103033426
XM_007232853.2 mRNA upstream 153384 20862649 ~ 20865785 (+) True med9
XM_022669328.1 mRNA upstream 208027 20800120 ~ 20811142 (+) True nt5m
XM_022669423.1 mRNA upstream 285498 20725051 ~ 20733671 (+) True tnfrsf13b
XM_007232861.3 mRNA downstream 1105 21031902 ~ 21043890 (+) True cep55
XM_022669333.1 mRNA downstream 24771 21055568 ~ 21077901 (+) True pde6c
XM_022669334.1 mRNA downstream 78283 21109080 ~ 21128764 (+) True lgi1
XM_022669335.1 mRNA downstream 111789 21142586 ~ 21144194 (+) True slc35g1
XM_022669336.1 mRNA downstream 135771 21166568 ~ 21296823 (+) True plce1
TU51173 other upstream 860830 20157880 ~ 20158339 (+) False G37943
TU51016 other upstream 1534254 19481056 ~ 19484915 (+) True G37812
TU50913 other upstream 1687508 19329368 ~ 19331661 (+) True G37749
trnag-ccc other upstream 2121797 18897302 ~ 18897372 (+) True trnag-ccc
TU50609 other upstream 2642824 18371378 ~ 18376345 (+) False G37531
XR_002649894.1 other downstream 135771 21166568 ~ 21295290 (+) False plce1
trnar-ccu_1 other downstream 2716672 23747469 ~ 23747541 (+) True trnar-ccu_1
trnar-ccu_2 other downstream 2716774 23747571 ~ 23747643 (+) True trnar-ccu_2
trnar-ccu_3 other downstream 2716876 23747673 ~ 23747745 (+) True trnar-ccu_3
trnar-ccu_4 other downstream 2716978 23747775 ~ 23747847 (+) True trnar-ccu_4

Expression Profile