RNA id: TU51362


Basic Information

Item Value
RNA id TU51362
length 2156
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G38081
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 21044512 ~ 21083648 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tacaatacaatcatTCTACTTTGATGTTTCATCATGCAATACACATTACacttttttggtaccactttaaaataaggctaatttataaaggatttataaatagtttataatggtcatagtttatttatagttattaattagattgtaaatatttttaaaatattaataagcagttataacacatgaaCAGTTTTTATTCTCTTTCATACTGCTTAATCCTCAGATCTTTCTGGGTgctgatcttactttgtcttttccatcagtcagcatctCTAACACATCTCtaaataactttattcatttaactctACAGATGAATTATTTATCCAGTCATCGTAATGTGATGTATACGGACATATTTAAttgactaaactgactttctaaGACAAGTAAAATAAGAATCCAGAAAGATCTGAGGGtttcaaataaatgtataaatccCTATTTGGCAACCTGAGGCCTCAGACTCctttattaactatttataaaccctttataaatgagCTTTATGTAAAGACGGTCATGTTTTTCAGCCACACTCAACTCATTCAGTCCTAGGTAGATGTGCTAGTGGATTACTTTAAGatgaatatatatacacagaagtAAAAAATATGAAAGTTTACATTCTTGCTAGTCTCTGAGCAGGGTTGTTTCAGATACAgaaacctggaaaaaaaaacagacacaaatgGTTAGAGTTATCCAATTCATATACATTAAAGTCAATACAATTATATGtcataataatatacatatacaatgtGAAAAGCACTATTTAATGgtttagaattattattttactgctaCAGTTTGTATTTAATCGAGCTACACTATAGCTAAGTTGTAAAACACATGACAAAGAGAGTGAcatagagagaaaaacagaataatCTGTACCGTTGTGAGCAACCCTCCTGTATTTGCCCAGGAAGCAGAGTTCCTGTTTCTTCTGGGTCACGATCTGCTGGTCCTCGGGCCTCAGACCAGTGGGATGACGGGAGAAAACAAAGGAGTAGCCGTCCAGGCAGGTGCCATCAGTTTCCAGCTCCCTGCAGGAATAGTGTATGGCGTAGTTGTCGTAGTCTGTGTCAACGACCCAGTGGTCATCATCCAGTCTGGAGATAAGCAGCTGCACCCCAGTATCTGAGCTTGAACTTGGCAGGGTCGGGAGTCTCCTCTAAGGATCCGAACATGTTGGCACAGGTCTCCCAGTTgctaaagaataaaaataaataaataagaaagaaTAGTTATCATTGTGATAAAATCTAAAGGGCTCCAATGATTAATACTAAATCTATTCAGCAAAATTGTGTGGTTATtggtgttaaatcaacactattagtaattgttttaatagtgttgatttaacactggcaaattcACTCTGTAGAAACAATGACTGAACAGAACCATTCTTGGACTTACTTGAGGATGACGACTCTGCCAACAGCGGTGGCTGTCATTTTGCCATCCTCCTCCACTTGGTAGCTGGCGACAACATTATCCAGCAGGAAAAGTCCCACTGGGTCTTTTTTGGCTACAGCATACCATGTTCCTTGGAACTGCAAGAGAAATTAATGAATGTTCATATTCAGAAAGCCATGCACGGTGGATTAAATTGAGGAACATTACTCACCCTGTATTTATCAAAGTTCTCTTTTACTGGGATGCTGCTGACCACACATTCTTGTGCCCAGCCTGTTGCCAGGATGCACATCAACCCCACGAACCGTAACATGttgtctttttctgtctgcAAAAACACAACCAGCGTTTAGAACtggaaaaatacttaaaaaaaaaaaaaagcaacaaaacagGATAATCTTCTAGAAAGATCTAGACCTAAAACGATGACATGCAATAGTAAGTGAGTTTGTGTTTTTCCAGATTCCGAAGATTCCAGATGTTTTCTTAAAAGTTACaaaatcccttttttttttaaatcatacctCTGTGAGCCGTGCCAGATGAGAACGAGTGCAGCCCTCTGACTTGTTTGTTACAGATGGAGCTTATATACTGCTTCTGCCTGCTTCCAACAATTTCGCAATCCCACTTTCCAAACCGTTTCCCCCAGTCTTTTTTCATtgggctgtgtttttttttttttttacataacagCAGGAGTCTCATGTGTCCAACAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51331 lncRNA upstream 62781 20903077 ~ 20981763 (+) True G38062
TU51327 lncRNA upstream 169268 20874796 ~ 20875276 (+) True G38059
TU51267 lncRNA upstream 254418 20783931 ~ 20790126 (+) True G38010
TU51212 lncRNA upstream 533358 20509679 ~ 20511186 (+) False G37974
TU51377 lncRNA downstream 70125 21118229 ~ 21128741 (+) False lgi1
TU51380 lncRNA downstream 83526 21131630 ~ 21139901 (+) True G38093
TU51389 lncRNA downstream 224028 21272132 ~ 21272572 (+) True G38101
TU51397 lncRNA downstream 268999 21317103 ~ 21317345 (+) True G38106
TU51387 lncRNA downstream 273735 21321839 ~ 21322611 (+) True G38099
XM_007232861.3 mRNA upstream 654 21031902 ~ 21043890 (+) True cep55
XM_007232859.3 mRNA upstream 42533 20998115 ~ 21002011 (+) True emc9
XM_007232858.3 mRNA upstream 47887 20990981 ~ 20996657 (+) True LOC103033426
XM_007232853.2 mRNA upstream 178759 20862649 ~ 20865785 (+) True med9
XM_022669328.1 mRNA upstream 233402 20800120 ~ 20811142 (+) True nt5m
XM_022669333.1 mRNA downstream 7464 21055568 ~ 21077901 (+) True pde6c
XM_022669334.1 mRNA downstream 60976 21109080 ~ 21128764 (+) True lgi1
XM_022669335.1 mRNA downstream 94482 21142586 ~ 21144194 (+) True slc35g1
XM_022669336.1 mRNA downstream 118464 21166568 ~ 21296823 (+) True plce1
XM_022669337.1 mRNA downstream 118464 21166568 ~ 21296823 (+) False plce1
TU51357 other upstream 13747 21019169 ~ 21030797 (+) True G38079
TU51173 other upstream 886205 20157880 ~ 20158339 (+) False G37943
TU51016 other upstream 1559629 19481056 ~ 19484915 (+) True G37812
TU50913 other upstream 1712883 19329368 ~ 19331661 (+) True G37749
trnag-ccc other upstream 2147172 18897302 ~ 18897372 (+) True trnag-ccc
XR_002649894.1 other downstream 118464 21166568 ~ 21295290 (+) False plce1
trnar-ccu_1 other downstream 2699365 23747469 ~ 23747541 (+) True trnar-ccu_1
trnar-ccu_2 other downstream 2699467 23747571 ~ 23747643 (+) True trnar-ccu_2
trnar-ccu_3 other downstream 2699569 23747673 ~ 23747745 (+) True trnar-ccu_3
trnar-ccu_4 other downstream 2699671 23747775 ~ 23747847 (+) True trnar-ccu_4

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU230047 False 1264 TUCP 0.42 2 CI01000047 3132313 ~ 3133652 (-)
rainbow trout (Oncorhynchus mykiss) TU230047 True 270 lncRNA 0.38 2 NC_048566.1 91368559 ~ 91369003 (+)