RNA id: XM_022669334.1


Basic Information

Item Value
RNA id XM_022669334.1
length 5056
RNA type mRNA
GC content 0.42
exon number 8
gene id lgi1
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 21109080 ~ 21128764 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAAAATGAAACGAAAGTAGATTCTAGTAATTCCTTtgctatttttattctattcgcTTCAAACGTCTGTGAAAACCTTAGAGATTGGGGTGTTTTAGGttgacctggcaaccctgaccCCGTCTggtttcagtgtgtgtgggtgggtgtgtgtgtgtgtgtatgtgtgtgattgagagttCGGCACTGGGCTGCATCCCACCCCCAGCCCCACACCGGCCTGACCCCGCTCTCTGCGCTGCGCTGCGCTGTCTGAGAGCCCGGATCCGGACCCGGACTTcaggatgctgctgctgctcggcTCTGCTCGCCCGTGCccggctctgctgctgctgctgctgctgctcgccTCCAGCGCGCGGATCTCCGAGAGCCGCAGAGGTAAACAGCCGCGCTGCCCGCAGGGATGCACCTGCACCAAAGATAACGCGCTGTGCGAAAACCTCAGATCCGTCCCGCACAGCTTCCCTCCAGACGTCGTCTCCCTaTCATTTGTGAAGTCTGGATTCAGTCAAATCACATCGGGAAGCTTCTTACACACGCCGTCCCTCCAGCTTCTCCTGTTTACAGCCAACTCTTTTGACTCTATTGATGAAGATGCATTCCAGGGTCTACCACATCTGGAATATCTGTTCATTGAAAACAACAAAATCGAGTCAATCTCACCTCAGGCCTTTAGAGGTTTGAAATCTCTCCTACACCTGAGCCTCGCCTATAATAATCTAGAGACATTACCCAAAGATGTTTTTATGGGGATGGATGCCTTAACAAAAGTGGATCTTCGAGGAAACATGTTTAACTGTGACTGTAAGCTGAAATGGCTGGTGGAATGGATGTTTAACACGAATGCAACAGTGGACCAGATGTACTGCAGTGGGCCTCCAGTTTACCAGGGGAAGAAGATCAATGATCTGATGCCTCAGTCATTTGACTGTATATCCACAGAGTTTGCCTCCATGAAGTCACTCAAGTTTGAATCCATTTCTGTGGAGGCCTTCACCTTTGGAAATGATCAGTACGCAGTGTTTGCTCAGCCCTTTGCTGGAACATGCAGCTTCATGGAATGGGACCATGTTAATCTGGAGTTCAGAGCTTACGACACCATAGAGAGCACGTCCACAGTGGTCTGCAAACCAATGGTAATCGAAAACCAGCTCTTTATCGTCGTTGCCCAGCTTTTCGGAGGTTCACACATCTACAAGCGAGACGTCTCAGCCAACAAATTCATCAAGATCCAGGACATTGACATCCTGAAGATTCGGAAGCCGAACGACATTGAGGTGTTCCGGGTGGATGGCAAGTCGTTCTTCGTGATTGCAGACAGCTCCAAGGCAGGGTCCACCACTTTATACAAGTGGAACGGGAACGGCTTCTACTCCCATCAGTCTCTGCACCCCTGGTACCGTGACACAGACGTAGAGTACCTCGATATTGAAGGCAAGCCTCATCTGATTCTCTCCAGCAGCTCACAGCGTCCCGTCGTCTACCAGTGGAGTAAGGCCCAGAAGCAGTTTGACAGACGGACGGATATTCCAGAGATGGAGGACGTCTACGCTGTCAAACACTTTAAGGCCAAAAACGAGCTCTACATCTGCCTGACCCGCTTCATTGGTGACTCCAAGGTGATGCGATGGAATGGCGGCATCTTCACTGAAGTCCAAGCCATGCCTTCTCGAGGCTCTATGGTCTTTCAGCCTATCACCATTGGCAACTGGCAGTACGCCATCCTGGGCAGTGATTACTCTCTCACCCAGGTGTACCAGTGGGACCCCAAGAAGAACCACTTTGTACACTTCCAGGAGATGAACATTCAGGCACCCAGATCTTTCTCTTTGGTGTCCATTGACAACCGAGAGTTCCTGCTGGCCTCCAGCTTCAAAGGGAAGACTCAAATTTATGAGCATTTAATGATCGATCTAAGTAATTAAAGTTTGGTACGTGAAGAACGGGCAACATGTTTTTGATGGCGCTAGGCAACTTAAACCGTTACTTTTCCCACAGTCCCTTTTTGGACTTGATTTAACTTAGATAGATATTTATCAGGATTTCTTTTTAAACTACTTTCTTCTTCAGTTTCCCCAAACATGGAGcaagtttgtggacaccccttctaatgaatgcatttaggttctttaagttgcacccattgctgttACTTTTGTAAGCAATTGGCAGCATGCTTACAAATAACCCCCCAAACTCCATTATTGAGCTGTGCAGCAGTGaaaagaactgtgttctctggaatgatggttctCCATCCATTACTTTTGGGATCTGAGGTGGGTTTATGATCATTTACATTTAGAATATTTAGTAGACGCTTTGAtaattattttgaaattatttgtatctagtttgtagagactagaATCAGAAAGTTACACCAAGCTTTGATAATGTTGAGACACCAAGGAGAACAGtgttagtttaggaactctttaaaaagatgaaaaagatgagtcttcagtcTGCGTTTAAAGACAGTGAGGGATTGTGGGTCGAGCTGAGCTATACTAGAAGTTGGAAGAGCTGTTGGTGCAGATGTTGttttgaccattgccatcaaACTGGCTTTGTAGGCCAGCATCAGGTCTAACATCCTGTCCTCACTAATGCTTGTGCCACTAAATGCAATCAGATTCTTACAGCAATGTTACAAATCTAGAACAAAaaaagccttccctggacagtagagaaagTTACTCCAGCAGAGGAGTACAGTGATTGATtcggtgtcccaatacttttgtcacagtacagtacattatgATGTATATAACTGCAATACCATGCAGTTGATACACTTACAGAATgccttacatttacattttgcaAGAAAGTATGTGTGTGGGGCCTTCTGCGTTGAATATGAAGATGGTTTCTGCCACAAtcgcttgtgatcatccaacatcctgacataTTGGATCCTCTAATGCTCTTGCAGTTGAATGCAAACAAATCCTCACAACagaagacagtagagacagttactctggCAAAGGCAGgatgatctcttttttttaatgccctTGATTTCAGGAGAAATTGTGAATTAGCAGGTGTCGCAATATTTTTGTCCAAATAGTGTAGATACTTACTGTAGCCTACATCATGATGATTTATGGACATGATGCTCGTTTTATAGTGTAATgctatagattatagattatagattttTAGAATTTAGATTAAGAGtgataaatattgtaattacaACATGCCTaaaaatacactgtatataaatctCAACAATAATCTGGAGCAATCATTTGCATATTGCAGTCTTCTGCAATATCAATACTGCAGAAGCCAGTATCGCAAtaactatgtatatatatacagcaccagtcaaaggtttggacataccttgtttattttaaaatgttctgcattgtagattaatactaaagtcaccaaaactatgaagaaacacatataaaattatttagtaatcaATAAAGTGGTAtacaaagcagaatatgttttatattttagattttacaaAGTCACAGTAGCTCTCTTGAGTAGAttaacagttttgcacatcttggctggattttctcagtcagctttatgaggtagagtcacctggaattcaggctttcagttaacagctgtgctgaactcgtcaagatttaattacttgaatttcttacctcttaatgtgtttgagagcatcacttATAAGGTTGTGAAgaagtagagttggtatacagtgaatagctctatttgagtaatattctaatcacTAATCAAACTTTAAGAATTGAAggcagtcaatctgaaaaaaaaaagaaaaacaagaaagttgaaagtatcctcaagtgcagttgcaaagaccatcaaaaacattatggtgaaactggcactcatcaggaccgccccaggagaGGACAAGCAGgagttatctctgttgcacaggataagttctgatgaacttatacgcgttaccagcttcagaaaccagaAACCCAAAAAAGTTAACAGaaacccagataagagcacctaaatacttcacagagtattttggtttgtttgacacttttaagttactacatgattccttatgtgttccttcatagtttttatcacttcagtattaatttactgtatataaagatgatATGCTCCACAGCTCTATTTGCTATATCAAGacatttacagtgtatttaatattttcccAGAACCTGTTTGCTACTGAGGTCaagtacagtttatttttgttacatgtACTGTGATACGGGTTAACCCAGTAAGCCAGCAAGTGAAGTATCTCTATTTCCATGTAAAGAAATAGGGAGGGCTGTAAATCCACACCAAGAAAACAAATGTGTCAGACGGATCTTTGGCCAGTGTTAACAAAAGCAGTTTCCCCATGCAAGCTTATGACCTAGCTGACCCATATATCCCCGTTTCGTTGTTCACATCAACACGTActcctgaagtgtgtgtgtgaactgaaTAAACAGAGGAACAGAGGAGTTATTGAAGCTGTCAGTCAGAACTACATGCATTACCTTGTCTGCATATGATGCTTCCAGATGACTGCCTCTCTAGAAACATCCTTTGTGTCCATCTCTGTTGTCACCATGCGTTTAGCACTTTTCCTCTTTTTACACCCTCCCTCTAAACAAAAGCCATTGTTCACGCGTTCTCACACAGGCTAGTGGAGTGTTGACAGAAGAGGTATAATAAagaagtgaaaaaaacacagcttgagtgattaactgtgattaactacTTAGTAACAGGTtgccaaataaaatgtttacatttttactctAATCCTAAGAAAATAGGCCTCTAACTTTTATACATAAAGGGATCATCCTCTTGGCAAGGTTTCTCACACTGGGCTAGATTTATCCTAGATTTAAAGGAAAACGGGAGTTTGGGTTTTGTATAGCATTTTAGTAGGTAAATTCTAATGCAATAAATGTAGAATAATAGTATATTGTGTTTGTAATTTTAGAAATACAGTTTAAGTTGTTTAATTGTTACTTGTTGTTTGTCGTAGATGTGCTAATAAACCAATTTCACACCCTTGTAGGCTA

Function

GO:

id name namespace
GO:0048854 brain morphogenesis biological_process

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51365 lncRNA upstream 25432 21044512 ~ 21083648 (+) False G38081
TU51364 lncRNA upstream 60976 21044512 ~ 21048104 (+) False G38081
TU51366 lncRNA upstream 60976 21044512 ~ 21048104 (+) False G38081
TU51362 lncRNA upstream 60976 21044544 ~ 21048104 (+) True G38081
TU51331 lncRNA upstream 127317 20903077 ~ 20981763 (+) True G38062
TU51380 lncRNA downstream 2866 21131630 ~ 21139901 (+) True G38093
TU51389 lncRNA downstream 143368 21272132 ~ 21272572 (+) True G38101
TU51397 lncRNA downstream 188339 21317103 ~ 21317345 (+) True G38106
TU51387 lncRNA downstream 193075 21321839 ~ 21322611 (+) True G38099
TU51413 lncRNA downstream 230375 21359139 ~ 21359560 (+) True G38117
XM_022669333.1 mRNA upstream 31179 21055568 ~ 21077901 (+) True pde6c
XM_007232861.3 mRNA upstream 65190 21031902 ~ 21043890 (+) True cep55
XM_007232859.3 mRNA upstream 107069 20998115 ~ 21002011 (+) True emc9
XM_007232858.3 mRNA upstream 112423 20990981 ~ 20996657 (+) True LOC103033426
XM_007232853.2 mRNA upstream 243295 20862649 ~ 20865785 (+) True med9
XM_022669335.1 mRNA downstream 13822 21142586 ~ 21144194 (+) True slc35g1
XM_022669336.1 mRNA downstream 37804 21166568 ~ 21296823 (+) True plce1
XM_022669337.1 mRNA downstream 37804 21166568 ~ 21296823 (+) False plce1
XM_022669338.1 mRNA downstream 110316 21239080 ~ 21296823 (+) False plce1
XM_007231471.2 mRNA downstream 223427 21352191 ~ 21352892 (+) True LOC103044640
TU51357 other upstream 78283 21019169 ~ 21030797 (+) True G38079
TU51173 other upstream 950741 20157880 ~ 20158339 (+) False G37943
TU51016 other upstream 1624165 19481056 ~ 19484915 (+) True G37812
TU50913 other upstream 1777419 19329368 ~ 19331661 (+) True G37749
trnag-ccc other upstream 2211708 18897302 ~ 18897372 (+) True trnag-ccc
XR_002649894.1 other downstream 37804 21166568 ~ 21295290 (+) False plce1
trnar-ccu_1 other downstream 2618705 23747469 ~ 23747541 (+) True trnar-ccu_1
trnar-ccu_2 other downstream 2618807 23747571 ~ 23747643 (+) True trnar-ccu_2
trnar-ccu_3 other downstream 2618909 23747673 ~ 23747745 (+) True trnar-ccu_3
trnar-ccu_4 other downstream 2619011 23747775 ~ 23747847 (+) True trnar-ccu_4

Expression Profile