RNA id: TU51397


Basic Information

Item Value
RNA id TU51397
length 200
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G38106
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 21317103 ~ 21317345 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agggctggcccgaatagcgttttttgagctccggatattcggcactgattcgaagcgaatattcgaatattcgtttttaaaaaaagaggtaaaaaaaagcaaatcacggcccctttaatccactgaaaaatgttcaatttgctctgaccgacgagacatattcaccccggatttttggtgtttttatcccccatattttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51389 lncRNA upstream 44531 21272132 ~ 21272572 (+) True G38101
TU51380 lncRNA upstream 177202 21131630 ~ 21139901 (+) True G38093
TU51377 lncRNA upstream 188362 21118229 ~ 21128741 (+) False lgi1
TU51365 lncRNA upstream 233455 21044512 ~ 21083648 (+) False G38081
TU51387 lncRNA downstream 4494 21321839 ~ 21322611 (+) True G38099
TU51413 lncRNA downstream 41794 21359139 ~ 21359560 (+) True G38117
TU51418 lncRNA downstream 47016 21364361 ~ 21369269 (+) True G38120
TU51451 lncRNA downstream 257517 21574862 ~ 21620560 (+) True G38152
TU51455 lncRNA downstream 266113 21583458 ~ 21608327 (+) True G38155
XM_022669336.1 mRNA upstream 20280 21166568 ~ 21296823 (+) True plce1
XM_022669337.1 mRNA upstream 20280 21166568 ~ 21296823 (+) False plce1
XM_022669338.1 mRNA upstream 20280 21239080 ~ 21296823 (+) False plce1
XM_022669335.1 mRNA upstream 172909 21142586 ~ 21144194 (+) True slc35g1
XM_022669334.1 mRNA upstream 188339 21109080 ~ 21128764 (+) True lgi1
XM_007231471.2 mRNA downstream 34846 21352191 ~ 21352892 (+) True LOC103044640
XM_022669341.1 mRNA downstream 113127 21430472 ~ 21474118 (+) True ace
XM_022669342.1 mRNA downstream 135878 21453223 ~ 21474118 (+) False ace
XM_007241520.3 mRNA downstream 308256 21625601 ~ 21629176 (+) True dlx3
XM_022669348.1 mRNA downstream 507034 21824379 ~ 21828127 (+) True LOC111192390
XR_002649894.1 other upstream 21813 21166568 ~ 21295290 (+) False plce1
TU51357 other upstream 286306 21019169 ~ 21030797 (+) True G38079
TU51173 other upstream 1158764 20157880 ~ 20158339 (+) False G37943
TU51016 other upstream 1832188 19481056 ~ 19484915 (+) True G37812
TU50913 other upstream 1985442 19329368 ~ 19331661 (+) True G37749
trnar-ccu_1 other downstream 2430124 23747469 ~ 23747541 (+) True trnar-ccu_1
trnar-ccu_2 other downstream 2430226 23747571 ~ 23747643 (+) True trnar-ccu_2
trnar-ccu_3 other downstream 2430328 23747673 ~ 23747745 (+) True trnar-ccu_3
trnar-ccu_4 other downstream 2430430 23747775 ~ 23747847 (+) True trnar-ccu_4
trnar-ccu_5 other downstream 2430532 23747877 ~ 23747949 (+) True trnar-ccu_5

Expression Profile