RNA id: TU51455


Basic Information

Item Value
RNA id TU51455
length 410
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G38155
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 21583458 ~ 21608327 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CATAGACTGTGtacagctggacagagcatcgcctctcaaaagtgaagccaccacaggtcgggcgccccctgctgttcggtttcagaaagctgtgtaaccccacccatccccataggcaAATAAGataactttcaatcacgtttttttttccagtatactgtaattctacctccattatttaaatgcagcagctagtgtaacctctgcttatattgtcatatttttatatccccacagaattcgtttttaaaacgttattcagctctattcaaaaaaggtgtggttattgtaaaagggctggttatgggcgggaccaataacagaccgtcagctccgctccgctctgcagcctgtgacctcgaggcagccctcaggggcggggttatttaaatgagtaggctgtctcaaCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51418 lncRNA upstream 214189 21364361 ~ 21369269 (+) True G38120
TU51413 lncRNA upstream 223898 21359139 ~ 21359560 (+) True G38117
TU51387 lncRNA upstream 260847 21321839 ~ 21322611 (+) True G38099
TU51397 lncRNA upstream 266113 21317103 ~ 21317345 (+) True G38106
TU51389 lncRNA upstream 310886 21272132 ~ 21272572 (+) True G38101
TU51471 lncRNA downstream 78556 21686883 ~ 21693765 (+) True G38169
TU51650 lncRNA downstream 170331 21778658 ~ 21779093 (+) True G38301
TU51658 lncRNA downstream 219823 21828150 ~ 21841278 (+) True G38306
TU51668 lncRNA downstream 262095 21870422 ~ 21871536 (+) True G38310
TU51673 lncRNA downstream 273109 21881436 ~ 21882906 (+) True G38314
XM_022669341.1 mRNA upstream 109340 21430472 ~ 21474118 (+) True ace
XM_022669342.1 mRNA upstream 109340 21453223 ~ 21474118 (+) False ace
XM_007231471.2 mRNA upstream 230566 21352191 ~ 21352892 (+) True LOC103044640
XM_022669337.1 mRNA upstream 286635 21166568 ~ 21296823 (+) False plce1
XM_007241520.3 mRNA downstream 17274 21625601 ~ 21629176 (+) True dlx3
XM_022669348.1 mRNA downstream 216052 21824379 ~ 21828127 (+) True LOC111192390
XM_022669347.1 mRNA downstream 235638 21843965 ~ 21850981 (+) True ptges3l
XM_007233994.3 mRNA downstream 264985 21873312 ~ 21878213 (+) True g6pc
XM_022669351.1 mRNA downstream 330302 21938629 ~ 21950677 (+) True sgms1
XR_002649894.1 other upstream 288168 21166568 ~ 21295290 (+) False plce1
TU51357 other upstream 552661 21019169 ~ 21030797 (+) True G38079
TU51173 other upstream 1425119 20157880 ~ 20158339 (+) False G37943
TU51016 other upstream 2098543 19481056 ~ 19484915 (+) True G37812
TU50913 other upstream 2251797 19329368 ~ 19331661 (+) True G37749
trnar-ccu_1 other downstream 2139142 23747469 ~ 23747541 (+) True trnar-ccu_1
trnar-ccu_2 other downstream 2139244 23747571 ~ 23747643 (+) True trnar-ccu_2
trnar-ccu_3 other downstream 2139346 23747673 ~ 23747745 (+) True trnar-ccu_3
trnar-ccu_4 other downstream 2139448 23747775 ~ 23747847 (+) True trnar-ccu_4
trnar-ccu_5 other downstream 2139550 23747877 ~ 23747949 (+) True trnar-ccu_5

Expression Profile