RNA id: TU51658


Basic Information

Item Value
RNA id TU51658
length 2481
lncRNA type inter_gene
GC content 0.46
exon number 14
gene id G38306
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 21828150 ~ 21841278 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttttattgtgatCACTTTCAAAATGATCTAGAAACAAATCCTGAACTTTTAGATGAGTGAAAAGAAAATCATGGGCCCATTTCCGAATTCCAAATGCCATTCTAATTGCAGTAAACTCACaattcacattcacaaaaaTGCCATCAATCTGTAAAATTGGTAACATCAGTCCAAAATCTTCTAAGGTATCCAATTCCAATACTAAACGTCCACAGCTCTGTAATGTTTTGTGTATGTAATGTTGAATAATCACGTATTTAAGAGGAGCTGATTCAACAAACCAGCGATTAGTAAGCCCTTTATCACTTCACTTGGGTGTGAAagcaaatatactgtatatatgcagTGCTGCCATCCTCCAGGACACCTACCTACCTGTGCTTGAAAAGAACCTCAATAGATAATGAACGTAGGAGTGAAGCACTGACTACTGAAATGTGTGCTCAACTGAGAAACAGATTCTCAAAAAGAGAAGGTACAAATTCAACTATATAAAAGAACACTAAAAGAGACTGAAGCATTAAGGCCACACAGAGACCAAAATAACACTGAAGGCTGAGAATTAatcaggaaaataaaataaaaaagggtgtAAAAGACTGAAATGGGAGTAAGAGACAAGAGACAAGGCTCTGGTTCATGTTCCTTTAGGGGGAGTCCATTTCAGTGAACCAGGGTCTATGGTCTTGTTGTTGGTGCCTCTTTTGGTCTCTTTAGCTTTCCACTCGTCAATGAGGTCTGTCTCTTTAAGACAAGGTGCTTCCCCTTCCAGTACTTGAGCATCTGCAGCGACTGCAGAGTGCTGACGATATCCACAGGGTTCACAGCAGTCTCCTGACTGATTTCTTTGATAGAGATATCTTTGCCCTGAAAGTTGTACATATAGCGCAGGAGCACTTCCTTCCAATAGCTACGATAGCTGATGAGTCCCAGGTCAGAGAGAGGCCTTTCAGGAGATCCCACCTTCTCCTCCACTTTGGACAGCAGATAAGAAGTCAATCAGCATCTTGCcgtagccctgtctcatgtatTGTGGCATGGTCAGAATGCAGGAGACATTGTAGTTGAGGAAGGAGTTCTTTTCCTTTGAGAAGTAACCCACTAGGTGACAGCCAGTGTTGTCTGCCTCAGTCATCACGTAAAATAGGAAGGGCTCAACATCATAGTAGAGTGTCTTGTGGTCCAGAAACAGCTTGGCCAATAAACATAAATTCTGGCAGTAGATCTTGTTCTTTTTTCCATCCACCTCAAACACCGAGATCGCTCCTTGCCGATACACCTCATCTCCAGGGGGATGTTTCCACACACATTTGGCCATGTGCCTTCGCAGGATAGTCTGGCTTTTCATGTATTTGAGGCAGAACTCGCAGACGTACAGGCGGCCGAGCCGAGCATATTCTTCAGGGTATGGAGAGTGGTACCAGGTGTCTAACTCGTAGCGACCAAACAGAATAGTCTTTATCATGTTGCTGCCCTCAGTGATCTGACCCTGCATGCGTAACTTCTCCAGATCATCCGACGCCCTCGCCTGGGCTTTTCTGAACAGCTCCAGATCATATTCACTTGTGATGTTTTCCAGGAGTGGCTCTCTAGTCGTTCCATGTGTTTGTCTATGCTCcatgtatttttctttctgcTCCTTTGTTAGTCCAGTATCCCGTCTCTTCCTTATCTCCTGAACTTTCTCCTTATACTTCACCTGTCTTGGAGTAGGAGCCTGATGTCGTGTAGCATGCCTATTATCCTCATTATGAGTCTGACTTCGTTCATCTTCTTGCTTGTCACGTTCGGTGGCTTTCACCTTGCACTCATCTGCTGACAGATTATGGTAAAGGGGACAGCCAGATATGGAGAAATGTCTCTCATGTTTCCCAGTTAGATGACCCAGAGAATTGCAGCCAGGAGTGGGGCATTTCATGTTAAAGTTGTAGCTCTCGTGGAAGCGGCGGCGCTTTGGCCGGTGGGAGGGGTCGCTGCCTGAGTCTTTATGGTCCTTGGCAGCACCTTCATCATGTGACGCGTTGGGGCTGGAGATGTCTATGTCTGATTCAGATGAGGGGGCGTTTCCTGTGGGTGTTCTGGGTGGAGACTCATCCCTTTCTATTTGCTTTACATCTGGTGGGGCATCTTGAGAGCTTTGGCTGAGGCGGAGTGATGCTCGGGTCAGTCTGGCGCTGCTGCGGACTGTGGGGTCACTGTGGGAGCCGCTGTCGGTTTTCTCCGGCTCTGCCGAGTCGTCAGAGTCTGCTGTGCCGTCCGAGCTGCTTCCAGCGGTTCTCTTCCTGCGGGGCATAGCGCTCTCCTACAGCTCCCAGATAAATCCCAGTCGCTTCTACTATTAATAAGGTATCCTTCTTAATTTACCGTCAGTATTTAACCCGGTTTAAAGCgctaaaaacacacagttttaTAAACCAGGAGCTCCACAGAAATATGAGCTAAACTAGCATTAGCTTCAACACCCACCGCCGCGGTTTCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51650 lncRNA upstream 49057 21778658 ~ 21779093 (+) True G38301
TU51471 lncRNA upstream 134385 21686883 ~ 21693765 (+) True G38169
TU51451 lncRNA upstream 207590 21574862 ~ 21620560 (+) True G38152
TU51455 lncRNA upstream 219823 21583458 ~ 21608327 (+) True G38155
TU51418 lncRNA upstream 458881 21364361 ~ 21369269 (+) True G38120
TU51668 lncRNA downstream 29144 21870422 ~ 21871536 (+) True G38310
TU51673 lncRNA downstream 40158 21881436 ~ 21882906 (+) True G38314
TU51686 lncRNA downstream 67783 21909061 ~ 21937073 (+) True G38324
TU51691 lncRNA downstream 93003 21934281 ~ 22013053 (+) True G38325
TU51698 lncRNA downstream 172221 22013499 ~ 22016473 (+) True G38330
XM_022669348.1 mRNA upstream 23 21824379 ~ 21828127 (+) True LOC111192390
XM_007241520.3 mRNA upstream 198974 21625601 ~ 21629176 (+) True dlx3
XM_022669341.1 mRNA upstream 354032 21430472 ~ 21474118 (+) True ace
XM_022669342.1 mRNA upstream 354032 21453223 ~ 21474118 (+) False ace
XM_007231471.2 mRNA upstream 475258 21352191 ~ 21352892 (+) True LOC103044640
XM_022669347.1 mRNA downstream 2687 21843965 ~ 21850981 (+) True ptges3l
XM_007233994.3 mRNA downstream 32034 21873312 ~ 21878213 (+) True g6pc
XM_022669351.1 mRNA downstream 97351 21938629 ~ 21950677 (+) True sgms1
XM_022669446.1 mRNA downstream 118169 21959447 ~ 21984284 (+) True LOC103023313
XM_015601491.2 mRNA downstream 146526 21987804 ~ 22011805 (+) True LOC103021762
XR_002649894.1 other upstream 532860 21166568 ~ 21295290 (+) False plce1
TU51357 other upstream 797353 21019169 ~ 21030797 (+) True G38079
TU51173 other upstream 1669811 20157880 ~ 20158339 (+) False G37943
TU51016 other upstream 2343235 19481056 ~ 19484915 (+) True G37812
TU50913 other upstream 2496489 19329368 ~ 19331661 (+) True G37749
trnar-ccu_1 other downstream 1906191 23747469 ~ 23747541 (+) True trnar-ccu_1
trnar-ccu_2 other downstream 1906293 23747571 ~ 23747643 (+) True trnar-ccu_2
trnar-ccu_3 other downstream 1906395 23747673 ~ 23747745 (+) True trnar-ccu_3
trnar-ccu_4 other downstream 1906497 23747775 ~ 23747847 (+) True trnar-ccu_4
trnar-ccu_5 other downstream 1906599 23747877 ~ 23747949 (+) True trnar-ccu_5

Expression Profile