RNA id: TU51686


Basic Information

Item Value
RNA id TU51686
length 343
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G38324
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 21909061 ~ 21937073 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGGGGGATCGGGGGGATGAACGGGCTGTAATTCGGGAATTTTCCCGGTTCTGGAAGCTTATCGGCGGAAACTCAGAGCGCAGACTTGACTGTAGCGGCAGCTGTGCTGGAGAAAGACTGGAGGATTTCTGGAAGTTTGGGAAAAACAGAGGATTTACACGTTTTCCACACATTTTATTCTGAGGCTGCTGCTCTACACACAGCGGGTTCGGCTCAGGCCGGACTGAACGTTAGAAGATGGTGCCGGGTTTGGATTAACTGCTCTGAGGACTTGAGCTTGTCCTCTgcatggtgatggtggtggttatgatgatgatgatgatgatgatgatgatgatgatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51673 lncRNA upstream 26155 21881436 ~ 21882906 (+) True G38314
TU51668 lncRNA upstream 37525 21870422 ~ 21871536 (+) True G38310
TU51658 lncRNA upstream 67783 21828150 ~ 21841278 (+) True G38306
TU51650 lncRNA upstream 129968 21778658 ~ 21779093 (+) True G38301
TU51471 lncRNA upstream 215296 21686883 ~ 21693765 (+) True G38169
TU51698 lncRNA downstream 76426 22013499 ~ 22016473 (+) True G38330
TU51764 lncRNA downstream 116286 22053359 ~ 22053669 (+) True G38375
TU51790 lncRNA downstream 315076 22252149 ~ 22252642 (+) True G38391
TU51791 lncRNA downstream 341881 22278954 ~ 22327073 (+) True G38392
TU51774 lncRNA downstream 416436 22353509 ~ 22354614 (+) True G38379
XM_007233994.3 mRNA upstream 30848 21873312 ~ 21878213 (+) True g6pc
XM_022669347.1 mRNA upstream 58080 21843965 ~ 21850981 (+) True ptges3l
XM_022669348.1 mRNA upstream 80934 21824379 ~ 21828127 (+) True LOC111192390
XM_007241520.3 mRNA upstream 279885 21625601 ~ 21629176 (+) True dlx3
XM_022669342.1 mRNA upstream 434943 21453223 ~ 21474118 (+) False ace
XM_022669351.1 mRNA downstream 1556 21938629 ~ 21950677 (+) True sgms1
XM_022669446.1 mRNA downstream 22374 21959447 ~ 21984284 (+) True LOC103023313
XM_015601491.2 mRNA downstream 50731 21987804 ~ 22011805 (+) True LOC103021762
XM_022669448.1 mRNA downstream 133174 22070247 ~ 22097898 (+) True LOC111192422
XM_022669352.1 mRNA downstream 160678 22097751 ~ 22350082 (+) True prkg1
XR_002649894.1 other upstream 613771 21166568 ~ 21295290 (+) False plce1
TU51357 other upstream 878264 21019169 ~ 21030797 (+) True G38079
TU51173 other upstream 1750722 20157880 ~ 20158339 (+) False G37943
TU51016 other upstream 2424146 19481056 ~ 19484915 (+) True G37812
TU50913 other upstream 2577400 19329368 ~ 19331661 (+) True G37749
trnar-ccu_1 other downstream 1810396 23747469 ~ 23747541 (+) True trnar-ccu_1
trnar-ccu_2 other downstream 1810498 23747571 ~ 23747643 (+) True trnar-ccu_2
trnar-ccu_3 other downstream 1810600 23747673 ~ 23747745 (+) True trnar-ccu_3
trnar-ccu_4 other downstream 1810702 23747775 ~ 23747847 (+) True trnar-ccu_4
trnar-ccu_5 other downstream 1810804 23747877 ~ 23747949 (+) True trnar-ccu_5

Expression Profile