RNA id: TU52346


Basic Information

Item Value
RNA id TU52346
length 2338
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G38833
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 24458281 ~ 24514991 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CATTTGCTACACTTGCATTCTTTAACAGagataataaatattacatctgaatataattattgcattaaaaaatacacggcacactaaatatttacaaattaaatgccGTTCAAATGGACATTTACCTTTTAGTTCCAGCATTTATGATAGACAAAACCTAAAGTCTAGAGCATCCAGTAAAGGTCTGGGAACACTTGGGGATTTCATTTATAGAGTAATAGATATTCCCTACCTTTCAATCAGTTAATCAGTTTgcataagtttcatttctgatGTCCTCAGTCAcaagtaaaacagtgtaaataaatagacaACTGAGAGAAAGCTCTGCTTCATTTATctttcttaaataaaactaaaattagtcaatatttaaattattttcagatgaaaagaaaaatgacaGACCTGAAACTGTTGAAGTATTATATTCTGCATTGGCAAAACAATGTCTCATTTACAGCAGTAAACGGTAAACAGGGTTTTCAGGCATTGTTTCTTCCTGCTGACACAAATTGCCAATTGTGAAAGTTCACAAGATTATCTATGACACGTCACATCCTTTTTATAAGAACcataaaaaagaatatatatctTGCTATAATCACACAATTATATGTGAATTCTTGGGTCCTGTGGGTCCCACTATCCACCGGAGCTGCACCACAAACACAAACGGTGGGTGTTGAAGGACGGGATAGGGCGGATCAGACAGCatctcttttattgttttttgatgTCTGTACTGTGGTGagTACTGAACCCTGAATTTAACAGACATGTGTACTGTTACACCCCTGGTAATGTAGGTTTTGGCATTATTAAATTAGGACTGGCAAAAACAGCTTCATATAGCTTTATAACAGTGTTTGTTTAACGGAACAAAATGGTGACCAACTTTTACTATTTCTTACAAATATACAAACAGACCTTCACTCAGTGTTTGCTTCTATATTGTAGCACTAGATATACATGGCTAAAGAGGCTAACAACTGTCTGTCTCTTTGGAACTGTACAAActgcatttaaattaaattaattaaattaactcaATCACACACTGGCTTCTGAAAAGCTGTTGTGGTACTTTATCTCTAACAGCCTTACTTACACTATCGGTCAAACGTTTTAGAACACCTCCATTTCCctactttatttttacaatgtaaGCTCTTCAGGTACAGTGAATAACCTGAAATGGTAAAAATCCAGTAAACTTAATTGGCACAAAAGTAAACTGGCTGAAATAAGGAATCTGTAGCAatagaaataaactgagctttggaaattaattttaaaaaatttgaatttacgaagcctttgtctgtagtaaagcagtgctggaactgATGGTATCACTGCTgctactctctactgcagcattaacacacttactcacagcacattcacacctTCATCACCATAactaaaaaaagacacagaaacacagagaactctgtatcTACTAAAAGTAGAAGttattttctttagagaaattacagataaggccagagagcggtgagtactgtttcctacaccttcaaaagacttttagaaactggagaaaactgctgcAGGAAGAGGTCtagctgacccacatggcaaagCATTAAGCTCAGTTTAAGATTGGATTAAGTCTtaatttcagcagtgaagaaaaGAATGAGAGGTCTGACAGATGAAGTGTAGTAAAAAAGTCTTtgtgaagaggataaaataaaaaaagcttgtcTTGGTTACTGTATGtagcactgctactggacaaCAAAAAAATTGGGGTGTTGGTAAACTTTTGACCGGAAGTGTACGTGcgtataattaattattaaaaattaaaacgtAACTTGTGCAAGCAACAGCTTCACACATCTTGAGGGCAAGACCAAAAAAGCACATTTCAgacaattaaatataatttgggagaaagtGAGGAAAATCTAGCCTAAATCAATCAGATCCCCCTCCGGCACAGCCCTCACTTCCTTCCCTCTTCTCCGCCACTCGGCCACCAGTCGCCTCACCTCCTTTCCAAACTCCTCGTGCATTGTGCTAAAGTCCTCCATGGGCTCCGACCACTCCCCGAGGGGTGGAGCTGGGCCGCTGACAGGTGTGACGTGGGCTTGTCGTTTGGGCCAGAGTTTAGGAGAGCGTTTGCCAGCATGTTTAGCAGCGGTGGGCGGGACTTGAAGCAGCTGGTTGTTTCCAGGACCTCCTAGTCCTTTCATGTCCGCTTCAGCATAAAACACAGACCCTAGATAGAGCTTCTGAGAATGGGCCATGGTCTCCTTAGTCAGACGCGAACAGTCCACCGGCTCCACCCCCACCGCTTTGGCTGCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52333 lncRNA upstream 13875 24443634 ~ 24444406 (+) True G38822
TU52345 lncRNA upstream 31556 24426446 ~ 24426725 (+) True G38832
XR_002649910.1 lncRNA upstream 69979 24385736 ~ 24388302 (+) True LOC107197179
TU52207 lncRNA upstream 506379 23830486 ~ 23951902 (+) True G38723
TU52201 lncRNA upstream 612454 23778274 ~ 23845827 (+) True G38717
TU52351 lncRNA downstream 2545 24466389 ~ 24475428 (+) True G38837
TU52366 lncRNA downstream 40987 24504831 ~ 24510224 (+) True G38851
TU52421 lncRNA downstream 288911 24752755 ~ 24756580 (+) True G38903
TU52426 lncRNA downstream 305315 24769159 ~ 24813837 (+) True G38907
TU52436 lncRNA downstream 323901 24787745 ~ 24795792 (+) False G38910
XM_022669450.1 mRNA upstream 55622 24401118 ~ 24402659 (+) True LOC111192424
XM_007235380.3 mRNA upstream 772723 23628687 ~ 23685558 (+) True phyhipl
XM_007235381.3 mRNA upstream 772723 23659130 ~ 23685558 (+) False phyhipl
XM_022669360.1 mRNA upstream 864239 23418853 ~ 23594042 (+) True bicc1
XM_022669371.1 mRNA downstream 167859 24631703 ~ 24648610 (+) True LOC111192396
XM_007235900.2 mRNA downstream 188785 24652629 ~ 24663580 (+) True LOC103037544
XM_007235895.3 mRNA downstream 233292 24697136 ~ 24713813 (+) True mto1
XM_007235893.2 mRNA downstream 267056 24730900 ~ 24744132 (+) True LOC103035992
XM_015602066.2 mRNA downstream 287207 24751051 ~ 24765736 (+) True LOC103035168
TU52324 other upstream 483761 23974161 ~ 23974520 (+) True G38817
trnar-ccu_27 other upstream 708088 23750121 ~ 23750193 (+) True trnar-ccu_27
trnar-ccu_26 other upstream 708190 23750019 ~ 23750091 (+) True trnar-ccu_26
trnar-ccu_25 other upstream 708292 23749917 ~ 23749989 (+) True trnar-ccu_25
trnar-ccu_24 other upstream 708394 23749815 ~ 23749887 (+) True trnar-ccu_24
TU52386 other downstream 152940 24616784 ~ 24617452 (+) True G38870
TU52796 other downstream 911115 25374959 ~ 25375344 (+) True G39179

Expression Profile