RNA id: TU52366


Basic Information

Item Value
RNA id TU52366
length 4972
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G38851
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 24504831 ~ 24510224 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTAAAGCAAAAAACGATTTATTTTCAACAAAAGGATTTGAAATAAAAGGAGACCGAACAAATCCACACTGAAAAACATTCATGCATCATTCCAGGCACAGTGACAAACAACCAGTGTACAGAATCATATTGTTCACATCATTTGAGAGAGACCGGAACAgcatataaacattcaaacaaaCATTTGTTGTTATTCAAATTACGAAACATGCATTGATTATTAACAGCATGCTTCTTTCACAAAAGTAAATGatttaaagaataaacaaataaacagaaaagaaaCAACTGTTCAAACAgtccataaaataaaataaaagtaaaagtgtacaaagtttatatatgtataaacacataaacacacacctatCAGCCATAGCAATAAAaccactgacaggtgaagtgagCCCCACAGATCATCTGATTCCAATGCCACATATCGAACTGCCAGATTTTACCCTAGATGACGGAGTCAGAACATCTCCTATTCCTTAAATGCAATAATCACTACATAAAAAAGTGCCCAAGAAAGGACAACCGATGGACTGATCGCAGGGTCATGGGCACCCAAGGCTCAATGATGCTCATGAAGGCTCATCCCACCTCACAACCTGCAGGAACTCTTGGCATCTTGGAACCAGAGACCACAGAACACCTTCAGAGGTACTGTGTAATCCATATTACTGGTTAACATACATATGGACTGGTTTAGTGGCGGTAGGAGGACAAAGACATAattaggcaggtggttttaatgttctggctgatcagtgtatatCTGATATGGGTTATAttctttatagaataaataaaacacagcagaaCTGTTAGTCAGGTTAAATAAAAGATGCACTCTGCGATTTTAGAGTCACCACCCTTTGTGCTGTCATACCAAAACCTTGAAACAGACCAGCATATactgtttaaacattttataatgaatggaccaataaaaatgaaacaaaataaaatatgtaaatgtgaCACTGAAGTTAAAGAGACGTTCTggacaaaatgaaaaattactGTCGCTACATGTGCTGTAAACATGCCTACTCAACTCCACAATCCTCCAGCGGTAGACAGTAAtcaagtaaatgtaatgtgttacagtattCGTACTGAAGTATCTGCATTTTTTACTTGAACTACATTTTAAACTCACTCCACTACTTTGTGTAAAATCTTTACCTTTGGTTTATGTGTACATAATGAAAAAGGCATGTACACCAACAGCGTACACTTTGTCTTGATCTGTTACATACAGTAGCGACATTTTGGGAGTGTCTATGGcggcaataaataataaatgatattgaCTATACAGATACAGAACAGTAAAGGAAgctcatgtttttatttattttttctaatttttattttcattttcaaggCCAATTAACCAaaacactcattaggactccccctatcactagtgatgccccaacaccaggagggtgaagactagcacatgcctcctctgatacaggtgaagtcagccaccgtctcatttcaaactgctgctgatgcagcattaccaagcagcatcacagcgcgctcggaggaaagcgccgGAAGATCATcttacagacgccttgtgctgatcaacatcacccctTGGAGTGATGTAGGGAAATAGTGccctctacccacccagagagagcagggccaattgagctcactcagggctctggtagccaatgacaagctacataaacaggattcgaaccagccatcttctgatcatagtgctTTAGCCCGCTGGAACACTCGGAGCTCCAAAAGCTCATTTGTGAACACCACCTCTACAGCAGACACATTTCCACAAATATCGAAAGAACAAAGGCAGAAAATAGGAAATGGCAGTtaaggggaactgtggaagtcaagGCATGATCTGGAAGACCTTATGAGCTGACCAGAAAGACAAAGCCGACCCCATATATAACTGCAAAGAACCTCCTAAAAGATTTGACAAACCCAGGTGAGGTGTTGCACAACTCAACcagaaatacataaaattatatatttgcaGTAGTATGTGAACTATATAATCTTAGTTATACAGTGCCTTAAAAATGTATCCATACCCCTTTTTCCACGTTACATTCACAGACGTAAATGTATGTTATTGGAATTTTATATGATAGACCAACACTAAGTGGCAAGTAGtgagaataaaataatacagttcatatttttcagaaatgttaatgaataaaaatctgaaaagtgtggtgtttgtttgtattCAGCCCTCTGTACTTTGATACCCCTAACAATAAATTCCAGCATGAAAAATTACCTACAGAGGGTAAGTCACGAAATTAGTTAATAAAGTCCACCTGtgcataatttattattttggaAAATTGTAGAGCAGGAAGAGCATTAACTAAAGAAACGGCCAAAAGgctcatggtcactctggaggagccaCAGatatccacagctcaggtggggaaatctgtccacaggatgaCTATTGTTATCTGTTGTGTATTTCACCAGCCAGATCTAGAACTGCATGGTTTAGATTATAACATGTTTATGttacaaaatactgaataagaAGGCCTGAATATAAATGCATGCCACattttcaaaattttatttgtaacaatttttttaaaaacatgtattattttcttttcacttcACAAATACTTGCTACTTCGTGTTGgtgtatgaatgaataaatatgaatatgaatactttttaaaatactgtacataatatGTGAAAGAAAACTACAGAAATCTAAATTATTGTGCCTGGAAGAAAAATGAACTCACATTCAAAGTCACTTAGATCTTCAAGGTCAGCGGGTCCTACTCAGGATTTAGGCTCTGCCCACAAAAGCATGGTAGTGTCTATACCCGTTGTTGTCTGCACTGATCTATTTGGGTGTTTCTTTTAATTAGTGATCTGTCCATAGCAACAGTGTCGCATAATCATTACATACATATTTCATAGCAGGGTCACCCCTGGGTTCCAATAAAATCATAGAGTGCACCTTTAATACACAGAGGTTGAGAAAAAAAGCCTGTAGAATGAGAAAATATAGGATTGCTTCTGTAATGCCTCAAAAACCCCCAGTAGTGGCAGTAGTGAGCTGCTAACTGAGCACCAGTGGCTCACGGACAGACAGTGGCATACTTTCATACTCCTCTGACACGGATTCCgtaacagaaacacagataaagAAGAAGAGCCATATCAACACATCAAGCATGctgaacaacacacacaaacagaccgTTAGCGAGGATGCGTCCTAATTAAAGGAGAATTCCACTGGTATCACTGCTAACTTAAACTTAATTAAATGGTGGAGAAGTAAACAAAGTATTTCAGAGTGGCTGGGGTGTGAAATGGAGCTGTAAGACACTTAAGCTGCAAATACACTTAATTACCAATATACTTCCCGCCATCCGAGACACTGTTAATAATGTTAACAGTACCtcagcaacaagtccaaaagCCATGTTCTGTCCTGGTATGGTGTGATGCAGCATTTATGCAGGAAAGTACATCTagatcttagagcaacatatgctgccttcaatACCACTTCTTGAACACCACATGTTTTTCAGGGACATTCATGCacttttcaacaagacaatgcaaaaccacctgCTGCACGCATTACAAAGGCAGGGCTACAGAGGAAGATGGTACAGGTATTGACCTGGCCTGTCTGCAGTTCTGACTTGTCCCCAGTAAAGAATATGAGGATAATTCTGAAGCTACAAATGCAACATTGAACCTACACCTTAAGACGTAACTTTCTTTGCTTAGTATCGTCACTGACAAAGCCCTTTTTAAGTAGGAATGTCAACATTATGAAGTGGTAAATGCTTAACTATGCCCACTTTTTTGGAAGAAGTTTCAgggctgaaatgcaggaatggatgtacagTAGgttatcttgggttcatactgtctgcaatcaattAAAGACCAACATAAtctgcattttccatactgtcccaattttttttctgatttggggttgtaaatGAAATGGCTATGTTTGTGTTGTAGTCATGGAGATCTGGTAACACTgtgaaaaaataatatgtttgtAAGTTTCTCTACAGTAAACCacaatttcacaccaaacccccactctgactGGCTCTGTTTACTCATCAATCACTAATTAATTACTAATGAAAACATCAGTGGTATTCCCCTTTAAATTAGGAGTAACAATAATTCACCACAACAGCAAGCAGTTTAATGGCGATTCCTTAACACTGCACATTTCGACTTAAGACCACTTCTGTCAGAATTCGAAGGAAGCATTGCCTTATTGCAACCAAAAACTTGGGAAGTTATTGCACTGAAACCAAAATATGATGGCTTTTTAAATCTAATACTTCCCAAAGCTGCCCTGATTTAAAACTCATTTGTGTATGTTTGGTATAATACAATAAACCCTAGAATAAACCATTCTAGATTATGCAGCAGTTCCATTAACCTTCATAAAACAATAGCTAATTGCATTTGAGAGGCGTGTCGCTGCGAAATGAACAAGGTGGTGGAGCGGAACAGATATAAAAAGCCTAGCTGTGAATAAAACCCAGAGATTAAGAAGATTTGAGTGATTCTGAATAAATATTATGGAAACTGTTCTCAAAAAGAAGTTCCTCCACTTGAGAAAACATTTCGGCGCAATTCCCATTGGCGGAACTCGTACAGCGTAGCCGCACGCTAGTCACCAACACTCATCGGCTGCTAATTTAAGGTGGATGACCATTCGGCTGGAGACGGTCCGGTGATAATGAAACAGGCCGGCGGGGAGTGGGCCCTCAGCGGCGGCTCCTTCACTCCTGGAAGCCTGATCCTGGCAGATCGTTGGTCAGTGTGTGCCAGCGCTCCACCTTTGTGCCCTTGTTCTTCAGACAGTCTATCCAGTGTTGGAGGGCGTCGCCCTGCGAATGACAGCCCAGAGACACACCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52351 lncRNA upstream 29403 24466389 ~ 24475428 (+) True G38837
TU52346 lncRNA upstream 40987 24458281 ~ 24463844 (+) True G38833
TU52333 lncRNA upstream 60425 24443634 ~ 24444406 (+) True G38822
TU52345 lncRNA upstream 78106 24426446 ~ 24426725 (+) True G38832
XR_002649910.1 lncRNA upstream 116529 24385736 ~ 24388302 (+) True LOC107197179
TU52421 lncRNA downstream 242531 24752755 ~ 24756580 (+) True G38903
TU52426 lncRNA downstream 258935 24769159 ~ 24813837 (+) True G38907
TU52436 lncRNA downstream 277521 24787745 ~ 24795792 (+) False G38910
TU52441 lncRNA downstream 277521 24787745 ~ 24795792 (+) False G38910
TU52442 lncRNA downstream 277521 24787745 ~ 24795792 (+) True G38910
XM_022669450.1 mRNA upstream 102172 24401118 ~ 24402659 (+) True LOC111192424
XM_007235380.3 mRNA upstream 819273 23628687 ~ 23685558 (+) True phyhipl
XM_007235381.3 mRNA upstream 819273 23659130 ~ 23685558 (+) False phyhipl
XM_022669360.1 mRNA upstream 910789 23418853 ~ 23594042 (+) True bicc1
XM_022669371.1 mRNA downstream 121479 24631703 ~ 24648610 (+) True LOC111192396
XM_007235900.2 mRNA downstream 142405 24652629 ~ 24663580 (+) True LOC103037544
XM_007235895.3 mRNA downstream 186912 24697136 ~ 24713813 (+) True mto1
XM_007235893.2 mRNA downstream 220676 24730900 ~ 24744132 (+) True LOC103035992
XM_015602066.2 mRNA downstream 240827 24751051 ~ 24765736 (+) True LOC103035168
TU52324 other upstream 530311 23974161 ~ 23974520 (+) True G38817
trnar-ccu_27 other upstream 754638 23750121 ~ 23750193 (+) True trnar-ccu_27
trnar-ccu_26 other upstream 754740 23750019 ~ 23750091 (+) True trnar-ccu_26
trnar-ccu_25 other upstream 754842 23749917 ~ 23749989 (+) True trnar-ccu_25
trnar-ccu_24 other upstream 754944 23749815 ~ 23749887 (+) True trnar-ccu_24
TU52386 other downstream 106560 24616784 ~ 24617452 (+) True G38870
TU52796 other downstream 864735 25374959 ~ 25375344 (+) True G39179

Expression Profile