RNA id: XM_007232854.3


Basic Information

Item Value
RNA id XM_007232854.3
length 2147
RNA type mRNA
GC content 0.48
exon number 2
gene id rasd1
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 20866800 ~ 20869080 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCAACCTtgttgtttctattaaagtggccagtgatatagccataaaagctttaaaaactcTTCAGAAATATGCATAGGTGTTTTAAATGAATGGGTAGATGATTATTTTTGTTGCTGTTGATGAGCCTGTTTTGATCAGACTGACTCATGTGTGCCCTCTTGTGGTGTAAACATGTGTTAATGCACAGCTTGTGCACAGTAGTGAACACACCTAGCCACTCAGTCTCTCACTCTCCACAAAAAGAGCACTACCAGTATCAGTGTACAGGGTCTGGAAATGGCATGAATTAGGCATTATTCGTGCCGTCTTAAATGATGCAACAGTTACATTGTGGCATCTTAGGTGCGACACCATTTAAGGATGTACGTAGAGACTGAATGAGAATCCAAACTTAAGCACAATATATCAGACATAAGACATAACAATAACACTATAATTAGCCACTAGAGTTGATTTAGACACTTTAGTCACCATGCCAACACGTTTTCTTGCAAAAAGAAAAGTATTCTATGCTGCACCGCAGAGTAAACACGTCTCTCTGCTCGCTCTCGCCAAGCCCCAGCAGAGAGCTGGAATGACGCACAAAGAGCTTTTTCAGCCTTGCAGTGAGCGAGCGAGGGCTGGGTGGGCTGCAAGTTGCACAGGCCCGCCCCCTTCCAGCTCCACACGCTGCTTCTCATGCCTCTGAGCTGTGGAAGGAGGGGCACCAGGACCGGTATAAAACAACCATCCTCGCCTCTCACAGACTCAGAAATCAGAGAGCTCAGCAGACAAACACAGCTCCTTCCCTGTTGCTCTAGAACTCAGAGGAACAACGTTAACGTCGTGAAAGTATAAGGCACCATGATTAAGAAAATGTCGCCCTCAGAGAACGACTTCGACATCCCAGCCAAGAACTGCTACAGGATGGTGATCCTGGGCTCCACCAAAGTCGGGAAGTCTGCGATCGTGTCCCGGTTCCTCAACGGCAGGTTCGAGGAGCAGTACACACCGACAATCGAGGACTTTCACAGGAAGCTCTATAGTATTAGGGGAGATGTATACCAGCTGGACATTCTAGACACTTCGGGAAACCATCCGTTCCCTGCGATGAGGAGACTGTCCATACTCACAGGTGACGTCTTCCTCCTTGTGTTCAGCCTGGACAACAGAGAGTCCTTTCGGGAAGTGCAACGTCTCAAGCAACAGATCTTCGAGACCAAGTCGTGCCTAAAAAACAAGACCAAGGAGAATGTGGACGTGCCACTGGTCATCTGCGGCAACAAGGGTGACCGAGAGTTCTCCAGAGAGGTGCAGCGAGAGGAGATCGAGCAGCTGGTGGCCGGCGATGAGCAGTGCGCCTACTTTGAGATCTCGGCCAAGCGCAACACCAACGTGGACCGCATGTTCCAGACTCTCTTCACAATGGCCAAGCTGCCCAATGAGATGAGCCCAGACCTGCATCGTAAGGTGTCATTGCAGTACTGCGACGTGCTGCATCGCAAGTCATTCCGCAGCAAGAAGCCAAAGGATGGTGACGCATACGGGATCGTGGCACCATTTGCACGCCGCCCCAGTGTGCACAGTGACCTGATGTACATAAAAGAAAAGGCCATAGGTGGCAGCCAAGGCAAGGACAAGGAAAGATGTGTGATCAGCTAAAGACTGTCCTGCTGAAACTGCCACAAAACACGGCACAACAGGGTTGAGCTGCAGGCTGACAGACGCGCACACTGTTGCCATATTTACAGGTGGCGACGTCAGTGTAGCGCATGCGCACCGGGCGGAGACGTAGCCCACGCTGCGATGCAATGGACACGTTACTGTGCGTGAGATGTGTACATACCCAGAATGTGACTTTGCCGCGCTCAGTTAGAGCGCTCTGTAATGTGGCTTTCGTTTGTTGTGAGATTCGGCTAAACAAGCCGTTGAAAAGTCTGCTTCGGTACGTCTGCCTTTAAACAGATCTGGCTCACGAGACTCACGCAGCACAGTGAACTGCCATGTTCAGAACAGCCTACTGtttacattttgttattttataacaAATAACTGAACTTGAATGTTTGTTGCTTTTGGAACAAATTTTacaatgaatgtatttattcttCTGTCTCTGTACACTTTTGCAATGaggaaaatatgaaataaatgaatttattgaATA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07843 RASD1; RAS, dexamethasone-induced Ras-related protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51485 lncRNA downstream 1079 20862801 ~ 20865721 (-) True G38179
TU51318 lncRNA downstream 55658 20804055 ~ 20811142 (-) True G38052
TU51313 lncRNA downstream 99461 20767034 ~ 20767339 (-) True G38048
TU51296 lncRNA downstream 254198 20612275 ~ 20612602 (-) True G38032
TU51293 lncRNA downstream 317582 20546125 ~ 20549218 (-) True LOC111192388
TU51487 lncRNA upstream 938 20870018 ~ 20870550 (-) True G38180
TU51489 lncRNA upstream 2455 20871535 ~ 20871832 (-) True G38181
TU51491 lncRNA upstream 4252 20873332 ~ 20873636 (-) True G38183
TU51481 lncRNA upstream 5585 20874665 ~ 20875375 (-) False G38175
TU51479 lncRNA upstream 5685 20874765 ~ 20875375 (-) False G38175
XM_015601189.2 mRNA downstream 68853 20783929 ~ 20797947 (-) True cops3
XM_022669327.1 mRNA downstream 85471 20735303 ~ 20781329 (-) False LOC103037418
XM_022669326.1 mRNA downstream 85473 20735303 ~ 20781327 (-) True LOC103037418
XM_022669325.1 mRNA downstream 187369 20511671 ~ 20679431 (-) True slc39a11
XM_022669444.1 mRNA downstream 1008174 19851884 ~ 19858626 (-) True LOC111192421
XM_022669329.1 mRNA upstream 7354 20876434 ~ 20968546 (-) True pemt
XM_007232857.3 mRNA upstream 112325 20981405 ~ 20990118 (-) True lmf1
XM_022669330.1 mRNA upstream 134520 21003600 ~ 21018253 (-) False LOC103035258
XM_007232864.3 mRNA upstream 134520 21003600 ~ 21018253 (-) True LOC103035258
XM_007232862.3 mRNA upstream 150041 21019121 ~ 21030167 (-) True kif22
TU51149 other downstream 1041148 19818268 ~ 19825652 (-) True c4h10orf128
TU50715 other downstream 2231702 18633578 ~ 18635098 (-) True G37616
TU50696 other downstream 2293624 18572691 ~ 18573176 (-) True G37603
XR_002649891.1 other downstream 2548843 18282490 ~ 18317957 (-) False LOC103047479
XR_002649889.1 other downstream 3070814 17789951 ~ 17795986 (-) True vps25
TU51712 other upstream 1004240 21873320 ~ 21878377 (-) True G38338
TU52138 other upstream 2596139 23465219 ~ 23510619 (-) False LOC111192393
TU52261 other upstream 2814046 23683126 ~ 23692337 (-) True fam13c
TU52289 other upstream 2966000 23835080 ~ 23960895 (-) False G38791
TU52519 other upstream 3507596 24376676 ~ 24385304 (-) False LOC111192423

Expression Profile