RNA id: XM_007232858.3


Basic Information

Item Value
RNA id XM_007232858.3
length 3147
RNA type mRNA
GC content 0.51
exon number 6
gene id LOC103033426
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 20990981 ~ 20996657 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ataatttaaatataatagagagtacagtacagtacagtacagtacagtacagaacagtTGTGCAGTGTCTGTGGGGGGAAGGCCGTCAGCAGGGGGAGCCGTTCTGCACCTTTTCTCTCCTCAGAAGAAGAGCTCTAACAACTTCCGTGTGTGAAGCGCGCGGCTGGCAAAAGCAAACAACTTTACCCTTAGAGTTTAACAATGATCTTTACCTGCTAATTCCACTATGGATAACAGCCCAGGATTGCCACCTGGTGACGACCACAATGTAGAAATTCAGGGCTCTGTCACTGTCTGCAGCATAGAAGTGGAGACTGAGAGCCAGGAGGAAACTGCTTTTAGCGATGAACAATTCTATTGTGAGAGCTGCCATAAACCGTATGTGGATCAATGTGAGGTCCACGGTCCACCAGTGTTCACCAGTGATTCCTACACACTCACAGGAATCCCTCAGAGGGCTCTCCTCACTCTGCCCCAAGGTCTGGTCATCGGCAGATCAACGTCTCCTGGAGCAGGGCTAGGGGTTTTTAACCAGGGCCAGGCTCTTCCTGCTGGAATGCATTTCGGTCCTTTGGACGGAGAGCAGACCACCAAGGAAAAAGCTCTGGAGAGTGCATTCTCTTGGGTGATCTGCCGAGGAGGTGATCAGTATGACTACATTGATGTAGAGAGGGACACGCATTCAAATTGGATGAGGTATGTCGTCTGCTCGCATAGTGAGAAAGAACAGAATTTAGTGGCGTTTCAGCAGAACGGGCGCATTCTGTTCCGCTGCTGCCGACCCATACCTCCTGGGCAGGAGCTGAAAGTGTGGTACGCGGAGGATTACGCCAAAAGCCTCGGGATCACCTGGGATAAAATCTGGGACAGGAAGTGCACACCTCTAGGAAGAACTGATGAAGAGGCACAGGTCTTCCTCTGTCCTTACTGCCAGTACTCTTTTCCCGCTGCTTTTTATCTGCACAGACATATCAGACGCTCACATCCAGAAGAATCCTCACATTTTTCAGAAACTCAGGTTCTGGAGACAACAGTCTTGAACCTGGATCAGTGTCTGCTTGCCTCTGATGCACCACCATCTTCTTCCCATTCACAGACAATTGCAGAATCTTTCCAGAGCCATTCTCCAACCCTCGATGGTCAGACAGAGAAATCCACTGCAGCTGAACTGTTCCATGAACACAACAGTAATTTGAGTGACTCTACAGAGCAGACTGACAGTGGTGCAACAGAGCAGAACAAATGTGTGGAGTGCAGCAGAACATTTTTGAGGTCATACCATTTAAAAAGACACCAGCGCACAATCCACTCCAAGGAGAGGCCATATTGCTGTAGCCACTGCGGGAGGTGTTTTAGTCAGGCTACAGGGTTGAAAAGACACCAGCAGACCCACCAGGGTAAAAAGAACTTGGGAACAGACTCTcaacctgcagagaaagagggTGTGCCAATGGCAATCTATCCTTGTACTGAGTGTTCGTTCTCTTTCGTGGCAAAGCTCAATCTTTACAAACATCTCAAACGGCACCACCATGAACAGTACCTCAAAGTAGTAGAGAATCGCTCTATTAACGCAGAAACGCCAGTGCAGGTTGAAGAAATCATAGACAAAAATGACCCACCGTACGAACCACCAACCAGGAATAGAAAATCTGCTCTGAGCCCAAACAAGCGCAAGGGTCTTCTGAAAAAGGGACCTTCTGGTCGACCTCGAGGCCGACCACCTAAAAACAAAACTACTCCAAAGCCTGTTCGGAACAAAGCTCAGGAGCAGAATCAAAACATGTCGATCACATCTGAACAGGCTACCGCAGATTTGGAGGGATCAGCAGAGTCGCAGAAAGCCCAGGAGGTCCAGGAGCTGCCCACATCTTCCCACATATGTGGTGAGTGCCTGAGAACCTTCAGCCACTTGCATCTTCTGAAAAGCCATGAATGCATTCAGCAGGGCGATGGCCCCCATGGCTGCTCTCTCTGCGACCTCTACTTCAACCGCCTCTGCAACCTGCGGCGCCATGAGCGCAACATTCATGCCAAAGAGAAGCCGTACTGCTGCACGCTGTGCCTCAAGTCCTTCACCCAGTTGTCCGGTCTAAAACGTCACCAGGAGAGCCACTCGCGCCTCAGCGCCCAGCGGCAAACTGCGACGCTGGCTGACGCCACCATCCACGCCTGCAGCCACTGCCCCTTCTCCTTCACTGGCGAGCGCTACCTGCACAAGCACATCCGGCGCCACCACCCAGAGATGACCACCAAATACATCAGTCTCAGCGAGAGCACTGTGTCCTCCAAGGAGCACAGTTGCTCGCAGTGCTCCAAGACCTTTCGAACAATTCGAGGTTTTAAGAACCACGCCTGCTTTAGGCAGGGGGACCAGCTGTACCTGTGTCCTGACTGTGGCAAAGCTTTCGGCTGGTACAACAGCCTGAAGCAGCACCAGCGCATCCACACAGGGGTGAAACCATACGCCTGCACCCAGTGCCAAAAGAGCTTTGTGCATGCCGGTCAGCTAAACGttcacatgcgcacacacacggGCGAGAAGCCGTTCCTCTGCGCTGAGTGCGGAGAGAGCTTCAGGCAATCGGGCGACTTGAGGCGGCACGAGCAGAAGCATTCAGGGGTGCGGCCGTGTCAGTGCCccgactgtgggaagagcttcAGCCGGCCACAGAGCCTCCGGGCACACCAGCAACTCCACAAGGGCACCAAGCTCTTCCCCTGCACACAATGTGGGAAAAGCTTTGCCCGCAGGTACCACCTGACCCGCCATCACCAGAAAATGCACTCCTGACAAACCTGTGACTGTTCCAGAGGATACACTCGATGCCTGTAAAAGCCagctgtactgttttttttggagCTGCTACGCAGACACTGTTACACAATTCTGATGTCGAGCTTTGTTGGTGCTGCTTATGGGCAGGAGTCAAGAGTTCCATGTATAACACAGATGCATCCATTTCATCTGCTCTatattattgtttaatgttaCTTTCTTAGGACTTTAGACACTTGGTTCATGTTGGTGGAAAAAAGGTAATGAGAATGGAAGGACATTTATCGGTAGAACCTAAATACATCCCTGTTGTTTTCAGAAACAAATgcaatgtttaatttcatccacaataaattaaattaaatgtg

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0043229 intracellular organelle cellular_component
GO:0008168 methyltransferase activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51331 lncRNA upstream 9218 20903077 ~ 20981763 (+) True G38062
TU51327 lncRNA upstream 115705 20874796 ~ 20875276 (+) True G38059
TU51267 lncRNA upstream 200855 20783931 ~ 20790126 (+) True G38010
TU51208 lncRNA upstream 445344 20445849 ~ 20545637 (+) True G37972
TU51212 lncRNA upstream 479795 20509679 ~ 20511186 (+) False G37974
TU51364 lncRNA downstream 47855 21044512 ~ 21048104 (+) False G38081
TU51365 lncRNA downstream 47855 21044512 ~ 21083648 (+) False G38081
TU51366 lncRNA downstream 47855 21044512 ~ 21048104 (+) False G38081
TU51362 lncRNA downstream 47887 21044544 ~ 21048104 (+) True G38081
TU51377 lncRNA downstream 121572 21118229 ~ 21128741 (+) False lgi1
XM_007232853.2 mRNA upstream 125196 20862649 ~ 20865785 (+) True med9
XM_022669328.1 mRNA upstream 179839 20800120 ~ 20811142 (+) True nt5m
XM_022669423.1 mRNA upstream 257310 20725051 ~ 20733671 (+) True tnfrsf13b
XM_007232850.3 mRNA upstream 282124 20702260 ~ 20708857 (+) True LOC103031004
XM_007232849.3 mRNA upstream 299255 20689666 ~ 20691726 (+) True LOC103030679
XM_007232859.3 mRNA downstream 1458 20998115 ~ 21002011 (+) True emc9
XM_007232861.3 mRNA downstream 35245 21031902 ~ 21043890 (+) True cep55
XM_022669333.1 mRNA downstream 58911 21055568 ~ 21077901 (+) True pde6c
XM_022669334.1 mRNA downstream 112423 21109080 ~ 21128764 (+) True lgi1
XM_022669335.1 mRNA downstream 145929 21142586 ~ 21144194 (+) True slc35g1
TU51173 other upstream 832642 20157880 ~ 20158339 (+) False G37943
TU51016 other upstream 1506066 19481056 ~ 19484915 (+) True G37812
TU50913 other upstream 1659320 19329368 ~ 19331661 (+) True G37749
trnag-ccc other upstream 2093609 18897302 ~ 18897372 (+) True trnag-ccc
TU50610 other upstream 2614636 18371378 ~ 18376345 (+) True G37531
TU51357 other downstream 22512 21019169 ~ 21030797 (+) True G38079
XR_002649894.1 other downstream 169911 21166568 ~ 21295290 (+) False plce1
trnar-ccu_1 other downstream 2750812 23747469 ~ 23747541 (+) True trnar-ccu_1
trnar-ccu_2 other downstream 2750914 23747571 ~ 23747643 (+) True trnar-ccu_2
trnar-ccu_3 other downstream 2751016 23747673 ~ 23747745 (+) True trnar-ccu_3

Expression Profile