RNA id: XM_007232861.3


Basic Information

Item Value
RNA id XM_007232861.3
length 1743
RNA type mRNA
GC content 0.47
exon number 9
gene id cep55
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 21031902 ~ 21043890 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTGACGTAGCACGCAGCGCTGAGTTTCAAATGGTGTTGGGGTGGTTTGTGTTTGGGGATGTTTGTTTCCGTGTTTTATATGAAAGTGTAAATCGGTTGAATAACTATAAAGGGGTGGGAGTATTCCAGCCATGGCAGCAAAAGGAGCCAAAGGAATAATAGCGAATAAACTCGGATTTAAGAACAGCGGCTCCAAGTCTGTGGAGAGTGAGctggagaaactgaagaagGAGAACGCTCAGCTGAAGAAAACCCTGGATGAAATATCAAAGCAAAACAGACCGAATCCTCATCCACATCATGACTCGGATAAGGCCAGCCTTCTAGAGAGAACTGCTTATCTGGAATCTCTGAGGCAGAAGAACACTCAGCAGCTGTTGGATAAAGAGCAGGAGATTGCCGCTCTGAGGCAGCAGCTGAGGACTGAGGGTGGGGAGCTGGTGGCTTCCCTGCAGAATCAGCtggagaaagacagaaatgAGGCAAAGCAGAAAGAGGAGGCGCTCCACGCTCTCTCACAGGAAACAGAAGATCTGAAAAATAAGCTGCTTGCAGTCTCCCAGAGGTGTGAAGCGCTTCAGAAGCACAACACTGACATACAGGGCTCTACAGGTGAGCTTGTGATGGTCCAGGAGCAACTACGTGATGCCTTGGAGAAGAATCAACAGTGGTTGGTTTATGACCAGCAGAGAGAGGCTTATGTTCAAGGTGTTCTGGCTAGGATggcagagctggagcagcagttaAGCCATTCCAAAGAAGCCAAGTCAGAAGCTAAAGACCGGCCACGGCCGTCTTCTGGGCGTGATCAGGAGCAGGTGCTGCCCACAGTGCAGCGGGAGCTGGACGAGAAGCAGGAGCAGGTTGATCTACTGCAGGCTGAGATGGAGAAGCTGAGGGTCCAGTGTGAAGACAGGAGGTGGGAGGCGGTACAGTTGAAGGAGGAACTACGGGAAAAGCAGAGGAGCAGCCGGCAGCTGGTGGCAGAGGAGAAGGCGCTGGCTGCTGAACACAGAGctgaactgcaaaaaaaactggAGGCGGCCAATGCCAGactagaggaggagaggaagagagcagctgagctgctgctgcagGTGAACCACCTTCAGAATTCCCTATTGAAACAAAACGAAGAGCAAAAACGGATTGCGATTTTGGAGCAACAGGTCCAAATGTCTGCGAAAGACTTTGAGAATGAGAAGTTAGACCGGCAGAGTCTACAGCACCAGCTCCGCAAAGTTCTGAAGGAGCTGCGCAAGGCCAGAGACCAAATCACACGCCTGGAATCTACAaaagaAGCTTATGGCGGGAGGGATGCTGAATACTGCATCCTGCCAGAGACGTCTCCGACAAAGACTTACAATGCACTTGATGAAAGTTACCTGGAGTGTCCCAACTGCAGGACTTCATACCCCACCAGTCAGCATAGAGAACTTCTCATGCACCTGGACTACTGCTTTGGTTAAACTGCAAAACTTcttcagagaaagaaagaagggattgggttttaatattttgtcctttttttaaataatctattttttaatatataaaatggcAAACCgttttgtctgtatttttatgtatttaaaaactgatcACTCCAAGGATTTTACTTGAACAGTAATTGGAATTAGAAAGATTTTCGTGGGTTTGTATCGGGTGGttgtgctttttcttttttttctttataatgctTTGACATGTTATTTTGACAAGAATAAATGGTAACATGTTGAA

Function

GO: NA

KEGG:

id description
K16456 CEP55; centrosomal protein CEP55

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51331 lncRNA upstream 50139 20903077 ~ 20981763 (+) True G38062
TU51327 lncRNA upstream 156626 20874796 ~ 20875276 (+) True G38059
TU51267 lncRNA upstream 241776 20783931 ~ 20790126 (+) True G38010
TU51212 lncRNA upstream 520716 20509679 ~ 20511186 (+) False G37974
TU51364 lncRNA downstream 622 21044512 ~ 21048104 (+) False G38081
TU51365 lncRNA downstream 622 21044512 ~ 21083648 (+) False G38081
TU51366 lncRNA downstream 622 21044512 ~ 21048104 (+) False G38081
TU51362 lncRNA downstream 654 21044544 ~ 21048104 (+) True G38081
TU51377 lncRNA downstream 74339 21118229 ~ 21128741 (+) False lgi1
XM_007232859.3 mRNA upstream 29891 20998115 ~ 21002011 (+) True emc9
XM_007232858.3 mRNA upstream 35245 20990981 ~ 20996657 (+) True LOC103033426
XM_007232853.2 mRNA upstream 166117 20862649 ~ 20865785 (+) True med9
XM_022669328.1 mRNA upstream 220760 20800120 ~ 20811142 (+) True nt5m
XM_022669423.1 mRNA upstream 298231 20725051 ~ 20733671 (+) True tnfrsf13b
XM_022669333.1 mRNA downstream 11678 21055568 ~ 21077901 (+) True pde6c
XM_022669334.1 mRNA downstream 65190 21109080 ~ 21128764 (+) True lgi1
XM_022669335.1 mRNA downstream 98696 21142586 ~ 21144194 (+) True slc35g1
XM_022669336.1 mRNA downstream 122678 21166568 ~ 21296823 (+) True plce1
XM_022669337.1 mRNA downstream 122678 21166568 ~ 21296823 (+) False plce1
TU51357 other upstream 1105 21019169 ~ 21030797 (+) True G38079
TU51173 other upstream 873563 20157880 ~ 20158339 (+) False G37943
TU51016 other upstream 1546987 19481056 ~ 19484915 (+) True G37812
TU50913 other upstream 1700241 19329368 ~ 19331661 (+) True G37749
trnag-ccc other upstream 2134530 18897302 ~ 18897372 (+) True trnag-ccc
XR_002649894.1 other downstream 122678 21166568 ~ 21295290 (+) False plce1
trnar-ccu_1 other downstream 2703579 23747469 ~ 23747541 (+) True trnar-ccu_1
trnar-ccu_2 other downstream 2703681 23747571 ~ 23747643 (+) True trnar-ccu_2
trnar-ccu_3 other downstream 2703783 23747673 ~ 23747745 (+) True trnar-ccu_3
trnar-ccu_4 other downstream 2703885 23747775 ~ 23747847 (+) True trnar-ccu_4

Expression Profile