RNA id: XM_007232870.3


Basic Information

Item Value
RNA id XM_007232870.3
length 4093
RNA type mRNA
GC content 0.51
exon number 26
gene id LOC103036789
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 21361238 ~ 21390673 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGAGGctggaagaaagagagatagataatagagagtcagagagagacagagagaagttTTTCTTCATTCTTGGCTGGAATGTACAGTAACACTCAGTATGGAGCTGCTCCACTGTGGTGCGTCTCCACTGTGTTGAGGGAGGTGACGGAGGAACCGAGCGGGGGAGTGTAGCTGCTGTAACTGCAGTTCATTAGTTCGGTTCAGATAGTGACTCGGTTCTGCTCGCTCTGAACGAATCCTCGGCTTAACTGCAGTCAGTAGGGCTCCACAGAGCATGGTGAGGTGTGCTGAGGTGGGACCCCGGGGTCTGTACAGACTGTAGCCGTGTGTGAGGGTTTACCGGCGGggctggaggagctggagggGCGGATGTGTGCCCGCCGCCTGTCCGGGAACGGTCTCACCGGTCTGGGCGGCGCCGTTATGGAGAGAGCCGCGGGCGGGGAGCCGAACAGGCGGCTGTTCGAAGCCTGCAGGAGCGGAGACCTGGAGCGGGTCAGGAAGCTGCTGAACGCCGCTAATGTGAACAGCAGGGACACGGCGGGCAGAAAGTCCACCCCGCTGCATTTCGCCGCCGGTTTTGGCCGCAGGGATGTGGTGGACCACCTCCTGAAGCACGGGGCTGATGTTCACGCCCGTGATGATGGAGGCCTCGTCTCTCTACACAACGCCTGCTCCTTTGGTCATGTTGAGGTGGTCAGCCATCTGTTGCGGCACGGAGCTGACGCCAACTCAAGAGACAACTGGAACTATACACCTCTCCACGAGGCTGCTATCAAGGGCAAGATCGATGTCTGTATAGTGTTGCTGCAGCACGGGGCTGAGCTAACCATCCGAAACACAGACGGGAGGACTGCACTGGACCTGGCTGAACCTTTCACCAAGGCTGTTCTGACTGGAGAATACAGAAAAGATGAACTTCTGGAGAGTGCAAGGAGTGGAAATGAGGAGAAACTGATGAGCCTTCTCACTCCTTTAAATGTGAACTGTCATGCCAGTGATGGAAGAAAGTCAACCCCTCTGCATCTGGCTGCCGGCTACAACCGGGTGAGGACAGTGCAGCTGTTGTTGCAGCACGGCGCTGACGTCCACGCTAAAGACAAAGGTGACCTTGTGCCTCTTCATAACGCCTGCTCATACGGCCATTATGAAGTGACTGAATTACTCGTGAAGCATGGTGCCTGTGTGAACGCGGTGGACTTGTGGAGGTTCACTCCTCTACATGAAGCTGCATCTAAGAACCGGGTGGAGGTGTGCTCTTTACTGCTCAGCCATGGAGCCGACCCCACTTTCCTCAACTGCCACAACAAGAGTGCCATCGACCTGGCCCCTACCACACTGCTGAAAGAGCGCCTGGCCTATGAGTTTAGGGGGCACGCGTTGCTGAAGGCCATCCGCGAGACAGACTTCATACGCATTAAAAAATATCTCTCTTTAGAAACCATCAACTTCAAACATCCTCAGACCCATGAGACTGCACTGCACTGTGCCGCATCATTGTCAAGCCCCAAGAGGACACAGATATGTGAGATGCTTCTGAGAAATGGTGCCAATATAAATGAAAAGACTAGAGACCTCCTGACACCTTTACACCTCGCTGCTGAGAAGTCCCACAAAGACGTCATCGAGGTGTTAATGAAGTACGAAGCCAAAGTACCGGTAAAGACAGTGGACAGTCAGGGTCAGGCGCCGCTGCAGCGTGTGGCTCAGTGCGGTCACCTCCAGAACTGCAGGCTACTGATCGGCGCTGGCTGTGACCAACCTATCACCTCCCTGCAGGGCTTTTACCCAGCACAGCTAGCCAACCAGAATATACAGGAGAACCTGCAGGAGGGTGTGCTGATGGGAAACTGTGATAAAGACAGGCACCTGCTGGAGGCTTCAAAGTCAGGAGACCTGGAGACAGTCAAGAAACTGTGCACACTGCAGAATGTGAATTGCAGGGATTTGGAAGGCCAACAGTCAACTCCACTCCACTTTGCGTCTGGGTACAACCGTGTGACTGTGGTGGACTATCTGCTGCAGCATGGAGCTGATGTGCACGCTAAAGACAAAGGAGGCTTGGTGCCTTTGCACAATGCCTGTTCTTACGGTCATTACGAGGTGGCTGAGCTGTTGGTAATCCATGGGGCGGTGATTAACGTGGCAGACCTGTGGAAGTTCATGCCCTTACACGAAGCTGCCGCCAAGGGAAAATATGAAATTTGCAAACTACTGCTTCAGCATGGTGCCGACCCAACCAAGAAGAATCGTGATGGGAACACACCCCTGGACCTCGTGAAGGAGGGAGACACAGACATCCAGGATCTCCTGAGGGGCGAGGATGAGCTGCTGGATGCTGCCAGGAAAGGCTGTCTGGCCAGAATCAGCAAAGTCTGTAGACCAGACAACGTCAACTGCAGGAACTCTCAGGGACGCCACTGCACACCTATACATTTGCCAGCTGGTTATAAAAATTTTGAGGCAGCAGAGTATTTGCTGCAGCATGGAGCTGAGGAGAACTCGCAGGACAAAAGCAGACTCATTTCCTTACACAATGCTGCCTCCTACAGAGTGAATGATGTCCGTGCCCTGCTGACTGCAGCCATGCCACCGTCTGCATTACCAACCTGCTTCACACCGCAGGTCTTCAGTGTATCTGCCTCTGCTGAAGCGGTGTCTTCCTCCCTGGCCTCTAACTCCTCAACACATCCCTCCAGATCCAGTATGGAGGCTTTTCACAAGCTGTTGGGGACCTCTGGGGATGAGGGGGCCATGAGAGTGGAGAAGACAGAGGAAGgtGTGGCTCCAGATATGAGTATCAGTCAGTTCCTTCAGAAACTTGGTCTAAAGTATCTTCTCGAGATCTTTGACAGAGAACAGATAACTCTGGACGTTCTGGTGGAAATGGGGCACAAGGAGTTGAAGGAGATCGGAATCAGCGCTTATGGCCACAGGCACAAGATCATCAGAGGAGTGGAGAGACTCATTAGTGCTCCTCAGAGTTTGAACCCCTACTTGACTTTAAACACAGCCAACAGTGGAACCATACTGATTGACCTGGCCTTGGATGAAAAGGAATTTCAGTCTGTTGAGGAGGAGATGCAGAGTACAGTAAGAGAACACAGAGACGGGGGATTTGCTGGGGGGATTTTCAACACATACAGGGTTCTAAAGATCCAGAAGGTTTGCAATAAGAAGTTGTGGGAGAAGTACACTCATCGCAGAAAAGAGGTATCTGAGGAGAACCACAACCACTGCAATGAACGCATGCTCTTCCACGGTTCTCCATTTGTAAATTCCATCATCCACAAAGGCTTTGATGAGAGGCATGCCTATATTGGAGGAATGTTCGGAGCTGGAATCTACTTCGCTGAGAATTCCTCCAAGAGTAACCAGTACGTTTATGGAATCGGAGGAGGCACAGGATGCCCTCTTCACAAAGACAGATCGTGCTACACGTGTGAGAGACAGCTGCTGTTTTGCCGTGTGACTCTGGGGAAGTCGTTCCTGCAGTTCAGTGCTATGAAGATGGCCCATTCACCGCCCGGCCACCACTCAGTCTCTGGTAGGCCAAGTGTTGATGGCCTCGCGCTGGCTGAGTACGTGATCTACAGAGGAGAGCAGGCTTATCCTGAATATTTGATTACCTACCAGATCATCAAACCAGATGGGACTGCTGAGTAACCTGGCATATCTGACATGCCTATGTAGGAGGAGTCTGCTGCATGCACATACTGACATTTTCATCTACTGTATAAATTGTCCTTCCTACTACAGCCTAATCTACTATGTATTACTTTGCAGTGTTAAAACTGTCTGTAGTAGCTGCTTAGTTCGGTGTTCATCCAGCCTGTTTCTAACCTTGTAAATCACCAACTTTCAggtttcaatttaaaatttaatcaaaagtggcttatttattttacaaagacTACTGTGTAtataactatttttttgtatgaGCATGTTAATTTATGAATATTTGTATTGTAATAGAGTTCTATGCTTGAAGGATGACTTGACATGTatgtgattttctttgttttgtgtttgtgataCGGAGTGCTGTACAATGCTCCCAGTAAAGCCAGTATAAAGGAAATACACTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51586 lncRNA downstream 1676 21359154 ~ 21359562 (-) True G38257
TU51546 lncRNA downstream 37078 21321709 ~ 21324160 (-) True G38231
TU51579 lncRNA downstream 43893 21317103 ~ 21317345 (-) True G38252
TU51567 lncRNA downstream 70034 21289848 ~ 21291204 (-) True G38246
TU51557 lncRNA downstream 81799 21264937 ~ 21279439 (-) True G38239
TU51638 lncRNA upstream 192943 21583616 ~ 21608302 (-) True G38291
TU51651 lncRNA upstream 387979 21778652 ~ 21778910 (-) True G38302
TU51723 lncRNA upstream 449121 21839794 ~ 21840799 (-) True G38342
TU51725 lncRNA upstream 453390 21844063 ~ 21852337 (-) True G38344
TU51744 lncRNA upstream 559878 21950551 ~ 21953218 (-) True G38356
XM_022669339.1 mRNA downstream 11818 21324428 ~ 21349420 (-) True tbc1d12
XM_022669445.1 mRNA downstream 40687 21296715 ~ 21320551 (-) True noc3l
XM_007232867.3 mRNA downstream 255931 21082664 ~ 21105307 (-) True LOC103035971
XM_022669332.1 mRNA downstream 313225 21044501 ~ 21048013 (-) True rbp4
XM_007232862.3 mRNA downstream 331071 21019121 ~ 21030167 (-) True kif22
XM_007232880.3 mRNA upstream 3115 21393788 ~ 21404557 (-) True LOC103039938
XM_022669343.1 mRNA upstream 90088 21480761 ~ 21579767 (-) True LOC103040573
XM_022669344.1 mRNA upstream 90088 21480761 ~ 21577648 (-) False LOC103040573
XM_015603797.2 mRNA upstream 245417 21636090 ~ 21644027 (-) True LOC103029147
XM_022669345.1 mRNA upstream 437455 21828128 ~ 21841369 (-) False LOC103032007
TU51149 other downstream 1535586 19818268 ~ 19825652 (-) True c4h10orf128
TU50715 other downstream 2726140 18633578 ~ 18635098 (-) True G37616
TU50696 other downstream 2788062 18572691 ~ 18573176 (-) True G37603
XR_002649891.1 other downstream 3043281 18282490 ~ 18317957 (-) False LOC103047479
XR_002649889.1 other downstream 3565252 17789951 ~ 17795986 (-) True vps25
TU51712 other upstream 482647 21873320 ~ 21878377 (-) True G38338
TU52138 other upstream 2074546 23465219 ~ 23510619 (-) False LOC111192393
TU52261 other upstream 2292453 23683126 ~ 23692337 (-) True fam13c
TU52289 other upstream 2444407 23835080 ~ 23960895 (-) False G38791
TU52519 other upstream 2986003 24376676 ~ 24385304 (-) False LOC111192423

Expression Profile