RNA id: XM_007233572.3


Basic Information

Item Value
RNA id XM_007233572.3
length 1417
RNA type mRNA
GC content 0.48
exon number 8
gene id LOC103041897
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 19802002 ~ 19816181 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gagaggggggaaggaaagaaagagagtgagaaagagagagagggagagagaggggcgcCTTTCTGTGGAGACAGATTTAACTGAGGGGTTTATGGAGTCTGAAGGTCTGGGGAATGAAGATCTCTGCAGTGGTTTTCCTGACTAGTGTTCTCCTCGGAGATGTATGCAGAGCCATCAACGTCACGGTCACTCCGTCTCCGTTCACAGTGGCCGGCGAGGGCGAGAACGTCACGCTGTCCTGCCAGGTGAGCCAGCGCCGCAAGTCAGACAGCCTTCCCGTGGTGCGCTGGATGTTCCAGCCGGCATGGGGGGGCGACGAGCACCTCGTGGCCAAAGTGAACATGAGGAAGGCCAAGTTCTACGGAAACTACACCAAGAGCTTCCCCACGCCCAAGATGAAGCTGACTGTGGTCAAACAAGGGAAGATCTACAACCTCCtcatcatcaacatcaccaGCACTGACAGAGGCCTCTACAGCTGCAGAGTCCAGGAGTTTAAGAAGCACCGCGAGCGCTGGAAGGCCTCCACCAACTCCACCGCAGCAACAGAACTCAAAGTGCACGTCCTCCCAGACACCAGCGCCAAGGAGGGACTGTGGAGTCTGTTTGAAGACGTGTACCTGTGTGCGGTGCTGATCTGCAGTGTGGGGCTGCTCTGCATGTGTATGTTTACTGTGGCCGTAAGCTGCCAGTACCTGCAGAGGAAGAGGcatttaaaagAAAATTATCATTTGGTCAAGAGTCCTCAGAACAGTTCTGGGGAGACGGTCACTAGCGTGGTCAGCTTGTCTCCTGCTCTACCTAAGAAACAGAGGAagtacaagaagaagaaagcaGTAGAACAGGAGGAGGTGCCGCCGGAGATCCCCGCTAAAGCACCCATTGCAGACAAACTGCGGAAGCCAAAACTTTTAAAACCTCAGCCCAGAAAGATCATTTTGCCCAAGATTGCAGAGGAGAGCCTGACGTATGCTGAGCTTGAACTGGTGAAGCCACTGCCAGACACCAAAGCATCAAAGACAGGAACCGTTTACGCCCAAATCCTCTTTGAGGAGAGAATGATGTAGGGCTGAGCCATTTTACTGAggaattttgttatttataatacattgtatCCATTGTAATGTCTGTTACAGTTTTCTAACCCAGTGTAAATGTATACAGTGTTTTAtacgtgtgtttttttttacgaagtatacatttttgtacatagctttttgtttcctttattttgtCACTTTCACACATTCCACTGTATATCTCTGCGATTGGAATCTAAGCTAAATACCATATATTTCTTTGGTTTTGACTCTTGTAAATTTAACATTCATACAGAGGGTATGAATTCATGTCACATTCCTGCTCTTTGAGGTGTCAGAACATTCCACAACAATAAAGGAAACGGCCAAACTGTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51145 lncRNA downstream 755 19800948 ~ 19801247 (-) True G37920
TU51146 lncRNA downstream 1189 19800560 ~ 19800813 (-) True G37921
TU51111 lncRNA downstream 2760 19798577 ~ 19799242 (-) True G37893
TU51140 lncRNA downstream 9391 19776897 ~ 19792611 (-) True G37916
TU51113 lncRNA downstream 143889 19657519 ~ 19658113 (-) True G37895
TU51152 lncRNA upstream 32692 19848873 ~ 19849320 (-) True G37927
TU51153 lncRNA upstream 35066 19851247 ~ 19851472 (-) True G37928
TU51154 lncRNA upstream 35363 19851544 ~ 19851803 (-) True G37929
TU51161 lncRNA upstream 160327 19976508 ~ 19976726 (-) True G37934
TU51163 lncRNA upstream 197965 20014146 ~ 20014354 (-) True G37936
XM_007233570.3 mRNA downstream 21507 19741133 ~ 19780495 (-) False LOC103041296
XM_015601373.2 mRNA downstream 44147 19741134 ~ 19757855 (-) True LOC103041296
XM_022669323.1 mRNA downstream 49630 19741133 ~ 19752372 (-) False LOC103041296
XM_022669321.1 mRNA downstream 93393 19681427 ~ 19708609 (-) False frmpd2
XM_022669317.1 mRNA downstream 93395 19678449 ~ 19708607 (-) False frmpd2
XM_022669422.1 mRNA upstream 2393 19818574 ~ 19825591 (-) False c4h10orf128
XM_022669421.1 mRNA upstream 2393 19818574 ~ 19825591 (-) False c4h10orf128
XM_022669444.1 mRNA upstream 35703 19851884 ~ 19858626 (-) True LOC111192421
XM_022669325.1 mRNA upstream 695490 20511671 ~ 20679431 (-) True slc39a11
XM_022669327.1 mRNA upstream 919122 20735303 ~ 20781329 (-) False LOC103037418
TU50715 other downstream 1166904 18633578 ~ 18635098 (-) True G37616
TU50696 other downstream 1228826 18572691 ~ 18573176 (-) True G37603
XR_002649891.1 other downstream 1484045 18282490 ~ 18317957 (-) False LOC103047479
XR_002649889.1 other downstream 2006016 17789951 ~ 17795986 (-) True vps25
XR_002649886.1 other downstream 2096979 17692498 ~ 17705023 (-) True cntd1
TU51149 other upstream 2087 19818268 ~ 19825652 (-) True c4h10orf128
TU51712 other upstream 2057139 21873320 ~ 21878377 (-) True G38338
TU52138 other upstream 3649038 23465219 ~ 23510619 (-) False LOC111192393
TU52261 other upstream 3866945 23683126 ~ 23692337 (-) True fam13c
TU52289 other upstream 4018899 23835080 ~ 23960895 (-) False G38791

Expression Profile