RNA id: XM_007234065.2


Basic Information

Item Value
RNA id XM_007234065.2
length 5177
RNA type mRNA
GC content 0.45
exon number 7
gene id znf281
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 440554 ~ 448541 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGTCTGTGTTGTCTGTGTCTCTTCTCACGACCCGTCCGGCGGACCCATAATTCCCCGCGTCGAGACAAGATGGAAGAGGGCAACAGCTGCGAGAGAACAATGTTTTGGCACTAAAACGCTGAAAGGAGCGAGTACTGAGCTTCGATTAGACCCGGAGAATCGGCCGTGGACATGCACAGTGTATCCCATCTTCTGAGCTGAATGCAACTTGCCCTCTTGAGGAACCAACCATGAGTATTATTCAGGACAAGCTAGGCAATGAATTTTTGCGCAACGGTGGCATGGACCCCAACTTTCCCACCAGCATGATCATGTTCAGCCATTTACCTCCAGTCACCAGTTTTACAAGGCTTACTCCCCAGTCTGTTGTGACGGACCTGAACCAGGAGATGATTTTAAAGAAGGAAAGGGATTCGCCAGAACATGGTGGTGGTTTTCTCCACAGCATGGGCATAAAGCAGGAAAAACTGAATGAGCTCGACTACCGCATCCCAATGTATACAACGGGCCCAGCAACGGGAATAGGAGGAAAGAGTACTGATATGCTGGACATTTCAAGTGGCAACCACCAGAACATGCTTCTTCATGATCTCAGCCTTAGCAATTTTCCTGGAAGATTAGGAAAAGACCCAAAGGACTCCACGCATAGACGAGGAAAGAGGACAAATGGAGAAGGGCCAGAAGGCAAAGGCAGAAGAAAGCGGGGGGATTCTACAaagtcactAATGCTGGATGGTGATGGAGGGCCCCTCTCTCCTAGCTCCAAACCACACATATGTGAACACTGCAATGCTGCCTTTCGTAGCTCGTACCACCTCCGAAGACATGTGCTCATTCACACAGGTGAAAGGCCTTTCAGATGCAGTCAGTGTAACATGAGCTTCATCCAGAAGTATTTGTTGCAGAGACATGAGAAAATTCACAGTGGGGAAAAGCCATTTAGCTGTGACCAGTGTAATATGCGCTTCATTCAGAAGTATCACATGGAGCGACATAAGAGGACACACAGTGGAGAAAAGCCATATAAATGTGATACCTGCCAACAGTATTTTTCTCGTACCGATCgtttactgaagcacaaaagaACCTGTGGAGAAGCCATAAAGAAGGGGTTGGACCCATCGATGCTTGACCTTGGAGATGAGGACCTTGGACATGGCAGCTATTTACACACTCAGGGAAATGCCAGTGCACCACAACGCAAGAGGGGCAAGTCCAAGGGCAGTGGAGAGGGGGGAGAACGCCGCAGGAAAAAGGCAGCAGTTGCCGGAGCTGGACACATGCTCGGCCTGCAGGACTATGCTGTTGACATGCCCACTGGCTCTGGGACGTCCTCCACTGGGCTAGGTGACCTGGCCAACACCAGCATGCAGAACCAGCATGTTCGCGCTCCTAAGTCCGCCTTCAAGAAAGGTGGACGTAAGGGAGGAGAAAAGAACTTGGTCTCCATGGATGTAGGTAGCTCCAACTCTGGTCTCCATGAGCAAAAACTGCTGGCCCCCAAGTCCATGGACCTGCCAGGTGCAGGAGGCATGGACAGCCTGGGCCTCCTCCAGAGTTCAGGGTCAAAGCAGACTGGGAACAGCAGCAACTACGATGATGCCATGCAGTTCCTGAAGAAGAGGAGATACTTGCACGCTGCGAACAGTGGTGGCAGTGGAGGCGACTACAGCACGGTCCACATGCCGCCTCAACCGACTGTCATCCAGGGAGGTATAGGAGAGCCCACGCTGGCATTGTTGGACACTTCACCTCTTGTCAGCGTTGACAGCAAGCATGACAAGTCTGGAATCCCAGATGAAGTATTGCAGAGCCTTCTGGACCACTACACTCACAAATCTGACGGTTCCCATCATGATGTGACTTTTGACCTCTCAGACCAGCATCATGTGGAGCTGCACCCTGCCTCTGCAACCCCCGACCTGGGAGCTGATGAAAACTCGCAGAACGGTTCTGGGGACAAGACTGGGGTCATGAACGAGTATTCAAAGTTTCTGCTACAGACACTGGAGAGAACCAGCCACAGTGGTGGGTTCACTCTTGGCCCTAGTGGCCCCTTCCCCGGCCTGCTGTCATCCAGCAGCAGCCCAGCCAGCAGCCTCTTCCCTGACAAGCACGTCTACACCACCTCCCCTCTTGAGTGTACTTTTGGACAGTCCATCACCTCTCCCCTCACTCCTTCTTCCACCTCAGCTCTACCAAAGTCTCACTTCAGCATGCTGGTAGGCTCCCCCTCACCTTCACACGCCTCACCCTCCTCCCAGCAGGGCTTTCACCTGGGCAGTTTGGAGCCCTCCGGTCACCAGCAGCTCACCCCATCTCAAGAGCTCACAGAGCAGCTGGAAAAGCCCCACTCACCTACATATCAACTTGCCACCCAAGATCTCGCTAACGGCAGTAGGCAAAAAGAGCAGGTAAAGAATGGCAGTGTCACAGAAAATGGTAGTAGTGGCACAAATGGTGGTGTTTCTGCCACTGGCTCCATCTACCCCCTGGCTCCAACTTCTGATCTGGCTTCCTTGGAGCCCTCCAAAGACGTGGAAATGCGCTCCACGTACCAGATCGAGAACTTCGCCCAGGCCTTCGGCTCCCAATTCAAGTCTGGCCGACGAACCCCTCTGGCATACAGCAGTGACCCCCAGGTCGGGGTTGGAGAGGTCGACCACAGAATATCACGGACTCCTGTGTCCGAATTCTCAGGGTATACTAGTCTGTTAGCTGACGTTGGTGAGCCGGCTAGCTCAGGAACCAAAACCGCCACAAGCCAAAGCTACAGGTAAAGGTTTTGGTGGCCAGCTTAAACCCGTAGTTTGGGACAAGAACTCTTCTCCAGCGCACCCTTCCCTAATAACCTCCCtaatttttatttcttgtttaggtGAGatgaaatattaattattacactGCCAGTTACATGTTAATACAAGACTCTACCAGGGAAGGTCTTCAAGACCTCAAATGCAATTTCtttgatattcattttttaaaaatgttttagttatttgtttttattagtgtaGAAGATTTCCACGAGTAGACTGCAATGTAATTTTCAGCAAATGTAGATGGTAGGTGATGACTGGCTTGACTTTTTCAGGAGCCCTGTGATTTAGCAATCATAATAgaattgtaaaataattcaaGATGATTTATAGTAATAACAGTTGTTGTCAGGGTGTGGCCCAGTATTCAGTGGCAAAAATGTCGGCCTATTGTCTGTTACAATAATTGAAAGTATTACTCaggaaaaatgatttttaaaaaaaaagaaagaattgggTGCAACTAGCACTCTGTGTTTTTACAAGTATACATTTGAAACTACAGTGATCCTTTTTGTTTCTGAAATTCCTTGAGAAGAATGATTACCCATTTTCAGTCTACCTGTTCATCTGATCACACTGGTGACTCTTTTCCACTACTTGTACATATGCAGAAATGACGGTACTTTTGATGTCAATGTGAAAACACTTGCATACTCCAATCACTAAGGGCCAGATGTGAGGCACAGACACATTTGCAAGCATACATGCATAcaactataaatatttatatttacacacacattcacattcataCACAATGTCTCATGGAAACCTATGTGCATGCATGTAAATATTTGTAAGTAGCATCTTTGCAGCTACTGAGAAATGGCCTCAGGGTGTGTTGAACACTGATTCATGCCCCTTTTTGTTAAACGTCATTAGCTGTCATCCAGTTTTGTTCAATTTCTCAAGGAATTAAATTAGCACTTTTAACCATTGAAGACGAAAACTGTTAGATCACAGATATGGACATTTATATGGTCAAAAAAaagctgtgattttttttttttaaatgatttttttttttccttttggttTAAAACAGAGAACAATGTCGTCGGGGCATTCTGACATTTTTTATGGATCGGTGAGTGGGTGGGGTAGGGTTTTGGGGGGGTGAGAAGGAGGGGGTTTATTACTGCGGTTCGTTTGAATTAGTAATGCCATTGAAACGGATGCCATACCAATTTATTTTGTGCTGTGGAACCTTGGGTGTTGAGCTCAGGGCCTCTTTGTATTGAAAGtgtatttaagtattaaatatgttttgatTTGAGTGAATAGCTGCAATTGGAGTTCTACCTCTCAGAAAAATTTAACAAATCTGATGCCTGTTGGACAAAAACAACCTAATGCAAACCTCCCTTTCACGTTCTAGCTTGGAGAAGCATCAGAGTTGTTTATCTTTTTTGAGAACGTGCAAATCTGAATTGGTGGACCTGAACCTCTATTTTTTATGAAGAAGAAATCAGGAACAATGCACGAGCGAGAAACTTCAACTGTTTCTTTCTCCGCAAATGCAATTTAAGGTGCCGTTGAAAGGGGCAGTGGGCTGCCGTGTCTTCCTCTGTTTCACTTCCACTGCTCCAATTCAGCGCAAAGCCGAACCCGGCTGCGGCATCGGGTCTGACTCCCTTGCCTTTCGGGTAAAATGGTCTCCTATGCTGACTCCACTCTGCACCAGTGTTGGGGGTCAAAGCCTAAACGCTGCAACTCCAAACTCGCCCAtgcttttaaaggaaaaaaataagcataaaatggaaaaaaagtagTGGCAAAAAGAATAGAATTGACCTTAATATACCTCATATCACTGTACAAATGAGAAAACCAGGGACATGCGTTTCATGTAGCCTATGTAGTGGTAATGTAGTATGTCAACCATAATGTATAATCATGTATTGCCACCTGTGTTTATGATTAGAATTCATGTtggtctgttgtttttttttttttttttttctcccctacCCCAGCATCTATGCCAAGCAGTGTTTCATGCTAGATTTATTTTCCTCCctttcatttttctgtttttttttttgtcttcccatttgtttttgttacttgccataatgtgttttgatatgatCTCTAGAAAGACTTTGTTTACAATAATGTACAAAAcactaaatgtgttttttttttctattttgattTTGTTGTCTGAAATGCATgatatgaagttttttttttatgtatggcTTTTTTTCTGATCACCACAATTGCACCAGTTTCTTTGTAGCAGATGTGTCCATCTTTagtctcatttttttgtgactCTACAGGGCTGTACATGTCAGATGACTTTATATATGATTAGATAAGCCAATAAAACCTTTTGTTATGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44800 lncRNA downstream 17166 418513 ~ 423388 (-) True G33296
TU44808 lncRNA downstream 20928 418513 ~ 419626 (-) False G33296
TU44783 lncRNA downstream 39242 396107 ~ 401312 (-) False LOC111192416
TU44794 lncRNA downstream 39242 397273 ~ 401312 (-) False LOC111192416
TU44777 lncRNA downstream 66408 370373 ~ 374146 (-) True G33290
TU44938 lncRNA upstream 157208 605749 ~ 609512 (-) False G33389
TU44943 lncRNA upstream 157208 605749 ~ 610141 (-) False G33389
TU44944 lncRNA upstream 157208 605749 ~ 610141 (-) True G33389
TU44934 lncRNA upstream 159866 608407 ~ 610663 (-) False G33389
TU44937 lncRNA upstream 159866 608407 ~ 612068 (-) False G33389
XM_022668853.1 mRNA downstream 22102 409414 ~ 418452 (-) True LOC111192339
XM_022669426.1 mRNA downstream 39564 389434 ~ 400990 (-) False LOC111192416
XM_022668851.1 mRNA downstream 75400 355650 ~ 365154 (-) False LOC103038367
XM_007251307.3 mRNA downstream 75400 355650 ~ 365154 (-) True LOC103038367
XM_022668846.1 mRNA downstream 103401 306356 ~ 337153 (-) True LOC103038678
XM_022668856.1 mRNA upstream 118345 566886 ~ 667790 (-) False LOC103046197
XM_022668854.1 mRNA upstream 118345 566886 ~ 667789 (-) True LOC103046197
XM_022668855.1 mRNA upstream 118345 566886 ~ 643689 (-) False LOC103046197
XM_022668857.1 mRNA upstream 118345 566886 ~ 624623 (-) False LOC103046197
XM_007234067.3 mRNA upstream 224644 673185 ~ 681349 (-) True LOC103045678
TU44781 other downstream 39242 389469 ~ 401312 (-) True LOC111192416
trnaq-cug other upstream 676924 1125465 ~ 1125536 (-) True trnaq-cug
trnar-ccu other upstream 677854 1126395 ~ 1126467 (-) True trnar-ccu
TU45334 other upstream 1362045 1810586 ~ 1812622 (-) True G33675
XR_002649841.1 other upstream 1574200 2022741 ~ 2034470 (-) False LOC103022010
TU45452 other upstream 1586553 2035094 ~ 2042274 (-) False LOC103022010

Expression Profile