RNA id: XM_007234067.3


Basic Information

Item Value
RNA id XM_007234067.3
length 1787
RNA type mRNA
GC content 0.49
exon number 12
gene id LOC103045678
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 673185 ~ 681349 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTTTAACtcattacacacatacacactctgaCAACGTTGGCAGAGAGGTGCCTGACCAGAGACTGTTCCAATGCCTGAAAACACAGATATGGCTGAGCAACAAAGCCCTGAGAAAATCTCAGAGGGTTCTGATGCtggaaaaaagcaaaagaaaccAAAGAAGAACAAGGGTGAAGCCTGGGCTATGGAGGGACCAAGGGATCCCTTTAAATTGCTGGATGCTCTCCCTGAAGAAAAGCAGCAGGAAATCCAGAGAGCTCTGCACCTCTTCTCTCTGGGTCAGGGTCCTCCCAAGAACCTGCAGGATGCCCGCAAACACAACTTCCGCTTCTGGAACACTCAGCCCGTCCCTAAGCTAGATGAGGAGGTGACGACACATGGGCCCATACAGTCAGAGAAGCAGAGCGTTCGGGAGGAGAGTTATTCACTCCCAGAAGGCTTCTGCTGGGACACTCTGGACCTAGGAAATCCTGAACAGCTGGGGGAACTGTGTACCTTACTGAATGAAAACTACACAGAAGAGGATGACAACACTCTCCGCAGTCACTACTCCCCTGAGTTTCTGCTGTGggctctgtgcCCTCCAGGTTGGCAGCCTGACTGGCACTGCGGAGTGAGAGTCAACTCCAACAGAAAACTAGTGGGCTTTATCAATGCTATCCCTGCCACTGTTCAAATATATGACACGGAGaggaagatggtggaggtgaactTTCTGTGTGTTCATAAGAAGCTGCGCTCTAAGCGTGTGGCTCCGGTGCTCATCCGTGAGATCAGCAGGCGGATCCAGAAGCAGGGATTATTCCAGGCCGTCTACAGCGCCAGCGCTGTGCTGCCATCGCCAGTGGCTAGCTGCAGGTACTGGCACCGGTCCCTGAACCCCCGCAAGCTGATTGAGCTgaatctctcctctctcacccGTAACATGACCCTGCAGCGCACGCTCAAGCTGAACCGCCTGCCTGAGGCAACAAAAACTTCTGGCCTGCGCCTTATGGCTCTGGCGGACGTCCCCCAGGTCCAAACTCTGCTGACTGAATATCTCAGAGGCTTCCAACTGTTCCCCATTCTGAACCAGGAGGAAGTTCAGCACTGGTTCCTGCCTAGagatggtgttgttgatacttaCGTGGTGGAGGGCACCGATGGGACTATAACTGCTGTGATGAGTTTTTACACCATGTCCTCCATAGTTCTTAACCACCTTGTCCATCGGAGGCTGAAAGCAGCATACGCTCTCTATGCAgtcaccacagcaaccccagTGCAGCAGATAATGGAGGACATCCTCATCATAGCCAAAGCCAGAGGATTTGATGTGTTCACTGCTCTGGATGTGCTGGGGAATAAGGGCTTTCTGGAACCTCTGAGGTTCACTGAGGGAGATGTCTGTATGAACTACTACCTCTACAACTGGAAGTGCCCCAGAATAAACCCAGACAAGGTCGGCATGGTGCTCAAGTAAGGGAGACGTTGTGAGTCCTCAGAAGAGAGGTTGCCACTGAATGTGAAGGACTGGAACACTGTGCTGTTAAAACCTTATTCTAGGCACCTCTGTACATGCATAGAATTGGATATCTTATTTTACTCCCAGGTTAAATGTAATGGTGTTGATGATGTTAACAGGAGTCTCAGTAGTGATGGCTGGAATGGAAACATGACATACATATTTAGAGCTAATTTTCTTATCCTTCAAAACCAtgttagtttttaataaatgatttaggACATGTTGTCTGTACTTTTTCTTTAATGTAAggcaaataaattaatgtaagtATAACAA

Function

GO:

id name namespace
GO:0006499 N-terminal protein myristoylation biological_process
GO:0004379 glycylpeptide N-tetradecanoyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44937 lncRNA downstream 61117 608407 ~ 612068 (-) False G33389
TU44934 lncRNA downstream 62522 608407 ~ 610663 (-) False G33389
TU44943 lncRNA downstream 63044 605749 ~ 610141 (-) False G33389
TU44944 lncRNA downstream 63044 605749 ~ 610141 (-) True G33389
TU44939 lncRNA downstream 63044 609053 ~ 610141 (-) False G33389
TU45016 lncRNA upstream 231039 912388 ~ 921646 (-) True G33441
TU45154 lncRNA upstream 472083 1153432 ~ 1156177 (-) True G33539
TU45161 lncRNA upstream 493091 1174440 ~ 1174655 (-) True G33545
XR_002649839.1 lncRNA upstream 1037299 1718648 ~ 1720446 (-) True LOC111192344
XR_002649840.1 lncRNA upstream 1039462 1720811 ~ 1727257 (-) True LOC111192345
XM_022668856.1 mRNA downstream 5395 566886 ~ 667790 (-) False LOC103046197
XM_022668854.1 mRNA downstream 5396 566886 ~ 667789 (-) True LOC103046197
XM_022668855.1 mRNA downstream 29496 566886 ~ 643689 (-) False LOC103046197
XM_022668857.1 mRNA downstream 48562 566886 ~ 624623 (-) False LOC103046197
XM_007234065.2 mRNA downstream 224644 440554 ~ 448541 (-) False znf281
XM_007234071.3 mRNA upstream 5742 687091 ~ 713037 (-) False LOC103046699
XM_007234070.2 mRNA upstream 5742 687091 ~ 712939 (-) True LOC103046699
XM_007234072.2 mRNA upstream 5742 687091 ~ 712938 (-) False LOC103046699
XM_022668861.1 mRNA upstream 32922 714271 ~ 735751 (-) False LOC103026030
XM_022668860.1 mRNA upstream 32922 714271 ~ 735392 (-) False LOC103026030
TU44781 other downstream 271873 389469 ~ 401312 (-) True LOC111192416
trnaq-cug other upstream 444116 1125465 ~ 1125536 (-) True trnaq-cug
trnar-ccu other upstream 445046 1126395 ~ 1126467 (-) True trnar-ccu
TU45334 other upstream 1129237 1810586 ~ 1812622 (-) True G33675
XR_002649841.1 other upstream 1341392 2022741 ~ 2034470 (-) False LOC103022010
TU45452 other upstream 1353745 2035094 ~ 2042274 (-) False LOC103022010

Expression Profile