RNA id: XM_007234070.2


Basic Information

Item Value
RNA id XM_007234070.2
length 3041
RNA type mRNA
GC content 0.51
exon number 15
gene id LOC103046699
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 687091 ~ 713037 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTGGGGGCTGGGGGTGTAGCCTGGATATTCTGAatacagcagcagcttcagagAGGAGCATCAGACCGAGCATCCTCGTGAATTTCCTTTCTCTGTTTCAGCCAGCCTGTCCTCGGAGAGCGGAGCTAGTGAGGTCTGTaatataaacacagagagagaaagagaggaaagaggCGGTATCTATCCTTCGCTCATGTGTTTAATCGGCTTCCTCTcagctcctcctgctcctcctgctgctgctgacacGCTGAGCCGCGGGCAGGCCCTCGCCCTCCCTCAGTCCAGATAAATTAGCAGCAGTTCCGAGGAGCAAAGAGGAGAAATCAGTGCTGCTCTCCGTCTCCACGCTGTTGTGCAGTGATTTCCTCCTCCACAGAGCTGAAGAACGACGTGGACAGCagaacagagcagagcagagatgCTGGGCAATGGAAAGAAGTACTGTCTCGCTGAGAAGAAGAGTGGTGCTGCTGTATCCCAACCCAAGACTGATGACCCTCTCAGAAATTTAGGTGTGCAGGATGATGAGGATGTGAAGACGATGCTGAGTGGCTCCTCCATGCTAAAGATTCGTTCTCCTCGCTGGCAGAGAAAACGGATGCTGCAGCTGCAGGATGATGGCGTCACTGTGCGATATGAGTCCAACAAGAGCTTCAGCAAGCCCAAAACCTTCTCTGTGATGGAAGTGGAGTGTGTGCGTGAAGGTTGTCAGTCAGAGACTCTCCGGAGACTAGCTGGATCTCTTCCAGAGGAACAGTGTTTGACCATCGTGTTTAAGAGTGGACGGAAGAGTTTGGATCTGCAGTGCCACGACAGAGAGGAGGCGCAGCACTGGTCCCGTGGCATCCGCACCCTGCAGGAGAGAGTGAACAACATGAGCCAGACTGAGAAGCTCGATCACTGGATCCATGCATACCTGAGGCAGGCTGACGTGAACCATGATGGAAACATGACGTATGATGAAGTGCAAACTCTGCTTCAGATGATCAACATAGACCTCAGTGAGCAGTACGCCTACAACCTGTTCaagaaGTGTGACAAGTCAGCGAACAGTCGTCTGGAGTACGATGAGATTGAGCTGTTTTGCCGTGAGCTGATGCGGCGCCCAGAGCTGGATAATGTGTTCCGTCAGTACTCCTCTAATGGACGTGTTCTGTCTACTGTGGACCTGCGGGAATTCCTGAAAGACCAGGGAGAGGACAACACACTTGTGCATGCACAGAGCCTTATTCTTACGTATGAGCTCAATGAGTGGGCtaagaagaaccagctgatgacaGCTAATGGTTTCACCATGTACATGCTGTCTAAGGAGAATGACGTGTTTGATCCAGAGCAGGGTAAAATCTATCAGGACATGAGCCGACCACTCAGCCACTACTTCATCTCCTCTTCACACAACACCTACCTTACTAAAGACCAGCTTGTAGGCGAGAGCAGCACTGAACCATACATCCGGGCGCTTAGCCACGGCTGTCGCTGTGTTGAGCTGGACTGCTGGGACGGAGATAAGGAGCCGGTGATTTACCACGGTCACACCCTCACCACTAAAGTGCTTTTCAGTGAGGTGGTGGAGGCAATCGCTGAGTATGCCTTTAAGGCCTCTCCATTtcctctcattctgtctctggAGAATCACTGTTCAGTGGAGCAGCAGGCCATCATGGCCCAGCAGCTGCGCTCCATCCTGGGAGACAAACTGCTCACAGAGCCCCTTAAGCACCAGCCTTGTGACAGCCTACCTTCACCTGAGGAGCTGAAGGGGAAGATTTTGGTGAAGGGAAAGAAGGAGCGAGTGGAGCAggaaagctccagctcatctgaGTCCAGCTCCTCGGAGGATGAGTCTAAAGCTGAGGGCAAGACCAAAGCAAAGAAGGAACGCGTAAAGAAGTGTACGTGTGCTTCTCCTCCGAAGGTGTCCAGGCTGAGTCCGGAGCTTTCTGATCTGGTGGTGTACACTCGCAGCGTTCCCTTTAAGGGCTTCGATCAGGCAGCACAGAAACCCACCAATGAGATGTCGTCTTTCTCTGAGAGCGATGCCCTCAAACACATCAAAAACTCAGGGAAGTTTTTTGTGCGGCATAACAGCAGACAGCTAAGCAGGATCTACCCATCTGGTCAGCGCCTCCAGTCATCCAACTATGACCCTCAGGACATGTGGAATGCTGGTTGTCAGATTGTGGCTCTGAACTTCCAGACTGACGGGGAGCAGATGGATCTAAACAGGGGACGTTTCTTACCGAACGGTCGCTGTGGATATGTCCTGAAGCCCAGCTTCCTGTGCCAACCTGACACTGAGTTTAACccagaaaacacaggaggaGGACCAGGACATAACCCCACTCTCCTCACCATTCAGGTCATCTCAGCCCAGCAGCTGCCTAAACCAGACACTGAGAAACTCAACTCCATCGTGGATCCTATGGTGTGGGTGGAGACGCACGGGGCTCCCATTgacaacaacaagaaaaagacaCACCGCATTGACAACAATGGATTTAACCCTAGATGGAACTGTACTTTTAAGTTTCTGTTGCATGTTCCTGAGCTGGTGCTGGTGCGATTCGTGGTGGAGGATCATGACTACACTGCCAGAAATGAATTCTTGGGACAGTTTACTTTGCCTTTCAGCAGCATGCGCACAGGTTACAGACACGTGCGGCTGCTGAGGGCCGACGGTTCCAGCCTCTCTCCTGCCAGCCTCTTCATTCATGTGAAGATTACACCTAATTACGGTAGCCCCAAGCACGCTGCATCGCCCAAAGCCTAGAAGAACCCAGGAAGTCCAGTCATGGTGCTCCTGAAAATTCTGATTGGTTTACAGTGATTGCCATTGCCACTGATTTACGTTAACTATTACCACATACTGTGTAATGTGCAGGTCACTGTTCGTTCTTTGAATGAACGCTCAGTGAAGTTACTCAGTGATAGACCAAATAGAACAAGCTTGGGAGAATGTTCACAACAGAAAACAGGTCATCAGGTCTGGATGAATAAAGCCAAAGGCTTATTTCAGGTACTAGCATGCATCAAG

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0005509 calcium ion binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0004435 phosphatidylinositol phospholipase C activity molecular_function

KEGG:

id description
K05857 PLCD; phosphatidylinositol phospholipase C, delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44937 lncRNA downstream 75023 608407 ~ 612068 (-) False G33389
TU44934 lncRNA downstream 76428 608407 ~ 610663 (-) False G33389
TU44943 lncRNA downstream 76950 605749 ~ 610141 (-) False G33389
TU44944 lncRNA downstream 76950 605749 ~ 610141 (-) True G33389
TU44939 lncRNA downstream 76950 609053 ~ 610141 (-) False G33389
TU45016 lncRNA upstream 199449 912388 ~ 921646 (-) True G33441
TU45154 lncRNA upstream 440493 1153432 ~ 1156177 (-) True G33539
TU45161 lncRNA upstream 461501 1174440 ~ 1174655 (-) True G33545
XR_002649839.1 lncRNA upstream 1005709 1718648 ~ 1720446 (-) True LOC111192344
XR_002649840.1 lncRNA upstream 1007872 1720811 ~ 1727257 (-) True LOC111192345
XM_007234067.3 mRNA downstream 5742 673185 ~ 681349 (-) True LOC103045678
XM_022668856.1 mRNA downstream 19301 566886 ~ 667790 (-) False LOC103046197
XM_022668861.1 mRNA upstream 1332 714271 ~ 735751 (-) False LOC103026030
XM_022668860.1 mRNA upstream 1332 714271 ~ 735392 (-) False LOC103026030
XM_022668859.1 mRNA upstream 1332 714271 ~ 735392 (-) True LOC103026030
XM_022668858.1 mRNA upstream 1332 714271 ~ 730328 (-) False LOC103026030
XM_022668862.1 mRNA upstream 1332 714271 ~ 730151 (-) False LOC103026030
TU44781 other downstream 285779 389469 ~ 401312 (-) True LOC111192416
trnaq-cug other upstream 412526 1125465 ~ 1125536 (-) True trnaq-cug
trnar-ccu other upstream 413456 1126395 ~ 1126467 (-) True trnar-ccu
TU45334 other upstream 1097647 1810586 ~ 1812622 (-) True G33675
XR_002649841.1 other upstream 1309802 2022741 ~ 2034470 (-) False LOC103022010
TU45452 other upstream 1322155 2035094 ~ 2042274 (-) False LOC103022010

Expression Profile