RNA id: XM_007234077.3


Basic Information

Item Value
RNA id XM_007234077.3
length 5670
RNA type mRNA
GC content 0.53
exon number 25
gene id LOC103021879
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 760921 ~ 831108 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ggGTTGAGCCGAGGCAGGGAGATGAAACCAGCTTAGAGGGAGCGGGCGAACGAGTGAGAGGAGGAGAGTGTGTGGAGGAGCGGCTCGCTTGTACAACGTCCCTGTGACCTCAGCAGAAAAAGAGGAGGATTACACACGTCCCTCTATTCTGCCATCTGACTGagtgagtgacagagagagagaaatatagaaaaacagagagagagagagaagaaggtgAGAAGGGGTGGAAACCAAGAGTTGAATTCAAGAGGAAATCTGCACAGGGCGCTGGTGACTCCGctgacagaaggagagagatagaaggaTAGAAGCTCAAGAagacagaaagaagaagaaaaagaagaagaagaagggatGAGAGCATGCTGTTCTggcagaggagtgtgtgtcCACTGTCCTGGAGCGTGTGTGTGAAGAGAACAGTGCAGGATCACTGCCATGTCAACGTCTAGGAAGCCTCACCGAGCTCAATGAATGAAGACATGGCCCAGGCAAAAGGGAGGAGAGATGGAGTTCCATCGTCCAACGAGAACGCTCGTCCACTGTCTGGGGAGGGCGTGGCGTGGAAGGGTCCTCGTACTGTGGTCCTGCAGAAGAACTCTCAGGGCTTTGGCTTTACACTGCGCCACTTCATAGTGTATCCGCCAGAATCCGCCCTTCACACCTCTCTGAAGGACGAGGAGAATGGCAATGGGAAAGGGAATCAGAGGGGGCGTCTTGAGCCCATGGACACTATATTTGTGAAGAATGTGAGGGAGAAAGGTCCTGCCCACCAAGCTGGGCTTTGCACAGgtGACCGACTGGTGAAAGTGAATGGGGAGAGTGTTCTGGGGAAAACGTACTCTCAGGTTATAGCACTGATCCAAAACAGTGAGAGTGTGTTGGAGCTGTCCATCATGCCAAAGGATGAGGATGTGCTCCAGTTGGTAAGTGCGTACTCTCAGGATGCGTATCTGAAAGGGAACGAGCCGTACACTGGAGGGGCCAGGAACCTTCCAGAGCCTCCTCCAATAAGCTACACACGCAGCAAACCTGCTACTGCCGGCCAGCCTGACAACCTCAACTGTAGACCAACTGGCCCGGCCGTCCCCTTGGACAACGGCACTGGGGGTGCAGGACACCGCCCGGATGCGCCAGTCCGTCACGTTCTAGGTCACCACCGAGCTCGCTCCTCATCCTCAGTAGGTATCAACCCATTGGACTTCCACTTCGCCAACCACAATGCGGCCATTGCCTCTGCCTCGTTGCCTCACCCACGGAAGAACAGCCTGCCACAGACACGCAGCGACCTGTGCCACCAGGCCTTGTGCGACTGGTACTACAGCCAAGCTGCTGAGCGCCCTGGGCTGCCTGTGTCCTCCCGACACCGCAGTGTCTCCCAGGACAGGCTGGCCGAGCTGGGACTGGCACTAGGTGGGCGTGAAGGCTGGCCTCACAGCGCCTCTCAAGACACTTTGCTTCTGCACTACGGAGCGGCCATGGCCAACCACTCAGACTCATACTGGCTGAGCAGGTGGGGGCCTCCTGCCGCCTCCAACCGCTCCTGCTCAGAAAACCTACTCGCTGCTTATGCTGCGTACGAACAAAGCTATGGACGTTCATTAGAGACCCTGGACCAGGCAGCCGCTCTGGTCTCTCCTCGCTACGACATGTCAGCCTTGCCTCAACACCAGCAGAGCAGCCAGCCTATCAGGACAGAGGAACGGCCTAACTCAGGCAGTCAGCGGCCACTTGTTTCCGCAACTGTGCCCCCCTCAGGTCGGGGCTCCAGCCATATCCAGCAGCAGACTGCCTCTCAATCTCAGCCTAGACGCGTGCCCACACAGACAGTAGATGACCAAACCGTGGGCTACCGTAGCTATAGTCCCTCTTTCTGCCGCAAAGCAGGCCACCTCATGCAGCAGGCACACTCCTTTAAGGATTCTTCCTATGCAGGACCTCACCTGAGCTGGACTTCCACACCCAAAAGCAGCCCCCCAGACAGCTCCAGCACAGCAGCTTCGGGCAGAGAGTCATCCCCTCTGTCTGTGGCGTCCACCGCTGAGACACAAGATTCAAAAACAAGCTCGGGAGCTGGAGGGGCAGTGGAGGAGCCTGTTCAAGCTCAGACACAAGAGGTCGTCCTCAGACAAAAGCCCCCCATTGGCAGGCGCGCACCTCACGCAATGCGCCACCCCAATTACTCTCTGCCTGTGGACTCCCCCGAGCATTCTGCAGCCTCAGCCCCTGCAGCGCGGCAAGGAGAACCCGCAAGCCGAACCAACGGCAGTCTGCAAGCCCTGCCTGTGGAGCAGGACTCCCTGGCGTCTATTCCCTTTATAGATGAACCCACCAGTCCCAGTGTAGACCTGCTTGCCCAGCACGTTTCTGCCTCCTCCGTGGTGTCCAGCGGCCTTTGTCAGGCTCCTGCACTTTCCGGCCGGCCCGAATCTCCCTCCCTCACCTCCCCTCTCACCCACCTCCTTCACACAGACAGCAGCAACGTCAAGAACAGCCGTCGCTCGTCGTACCTGCTGGCCATCACAACCGAGCGCTCAAAATCATGTGACGAGGGTCTGAACACGTTCAGAGAAGAGGGCAGAGTATTCTCGAGATTACCAAAAAGAGTCAAAAGCTTTTTTACAGATGGGTCCCTGGAGAGTCTGCGAGCAGCGGAGGAGGCACGCTCCAAACGCCACTCCACCTCCGAGCTGGGCAGCATCACGCTCACAGACATCAGGAAGGAGGGCTGGTTACACTACAAACAAATCCTCACAGAGAAGGGAAAGAAAGTGGGCGGTGGCATGCGGCCGTGGAAACGGGTGTACTCCGTGTtgcgcacccattcacttttcCTCTACAAGGACAAGAGAGAGGCCGTGCTCCACAGCGCCGGGTCGTTAGGTCACAGCCACAGCAATCAGTCGGAGGAtgaacagccaatcagcattcgcGGGTGCTTGATTGACATCGCCTACAGTGAGACGAAGCGGAAGCACACTCTGCGGCTGACCACGCAGGACTTCTGCGAGTACCTACTGCAGGCGGAGGACAGGGACGACATGCTGAGCTGGATCCGTGTCATccgagaaaacagcaaaactgaCAATGAGGAGCTGGGATTTTCCAGACAGGCTCTTATCAATAAAAAACTGAATGACTACAGGAAACAAAGCCCAACAGGTAACAAGCCGGATACATCTCCAAGAGTCCACCGGATGATGCAGCCGTTTCTTCTGTCCAAGACGGATAACACCTCCGGAGCGAATCGTGCCCCCAAATCAGACGGCAAGGAGGAGAGCAGTCCTCCTAAGGCTCCGTGGAGCATCAACATTATGAAGAAGGGAAAGAAAACGGGACCTAAGGCCTTTGGAGTCAGGTTGGAGGATTGCCCGCCGGGTGCCAATAATAAGTTTGTTCCTCTGATTGTGGAGATCTGCTGTGGTCTGGTGGAACAAATGGGTCTGGAGTACACGGGCATTTACAGAGTGCCTGGAAACAATGCAATGGTCTCCACGTTACAGGACCAGCTCAACAAGGGCATGGACATCAACACTGCTgaagagAGATGGCAGGACCTGAACGTAATCAGCAGTCTCCTGAAGTCTTTCTTTAGGAAGCTTCCAGAACCTCTTttcactgatgACAAATACAATGATTTCATTGACGCCAACCGGTTAGAAGATGCAGGAGATCGACTGAAGACCATGAGAAAACTGatCCGTGACTTGCCTGATCATTACTACCACACACTTAAATTCCTGATTGGTCACCTGAAGAACGTGGCTGATAATTCGGAAAAGAATAAGATGGAACCCAGAAACCTCGCTCTGGTGTTTGGCCCCACACTGGTGCGTACCTCAGAGGACAACATGACGGACATGGTCACGCACATGCCTGACCGCTACAAGATTGTGGAAACACTCATTCTGCACTTTGCCTGGTTCTTCAGTGATGCACTGGATAAAGATGAGAAGACCCCTGAGGACCAACGAGACGAGCAGCCAGTTCCAAATATTGACCACCTGCTCTCCAACATTGGCAGAACAGCACCACTGGGGGATGCCTCAGATTCCACCAACAGCGATTCAGCTAAATCCAAGGGATCTTTGAGTTCAAAGAAAGACGTGAGTGCCAAGGACTTTCTTCCCCTGTCCATCATATCAGCCGTGACCCGGAAGAGAAAGAAGCACCAGAGCGCCTGCCCTGCGGACAGCAGCAGTGACGAGGACTCTGAGCACGAACCGGTGAAAGCCAGCAACTACAGAGAGctgggggagggaggggggagtGACGAGGGGGACGGGGATGCAGGGTGTGCTCCTTTAAACTCAGAAAATCAGACCaaagaggaggtggaggagaatgGAGGAGAGCAGGTCATGGGGTCACATGAAGAGGCGGGACAGGAAGTGGGGGGAGCAGAGGATGCAGCTTgccagcaggaggaggaggaggatgatgatgatggtataCAGGTGGACACAGGTCCGAGGGCACAGCCGCGTCCTCGTAGCTTCCTCTACTCACACCAAAGTTCCATAGGTATAAGAGCCACAGGCAGTCCTGCTAgcccctcctcttcctcctgcccTAGCAGCGCTCACAGAACTGGTCAGACAAACCCTGTGACCAGGAAGAAGCTCCGCGGAGAAAGGGTTCGCCCTCGCTCTCTGTATGGCGAGGATGTGGGGATGGAACGGGCCGCTGTGGGACTGTCCTGGGTCAAAGCCTCACTTGTCCGGGGGCAGGAGAGGCTGCTTCAGGCCATGTCCCCCAGCCGCGATCCCTCCGTCCAGCAGGGATGGCTGGGCCAGATGCAGGCCAACCTTCTGTCCTCGGCCAACGACCTGTGGAGGTCAGGTGCCCAGCGGCGGCACGGCTCCCCAGAGACAAGACGCAGGCGGAGAGACTGGAGGCGCCACACTGTGGTGGGCAGCGTGCCGGGGGAAGGCTGACAAATCACATGAAAGCACCCTTTAAGCTAATAGATTAACCCAGTTGCTCCTGAAACTGGTCCTGCAGAACCTCAGGGCTacacattttattcattatcCCTGCTCCAACACTCCCATATCACAAAAGGAAGGACATGTAATAACCTAGTGTTTTCCAATCTATTCTCTATCTGCTGCATCCGTACCACAGCCTCTCCcacagacaattatttttatgTCTGTCCCTGCAATAAGAAATGAACAGCAAATCTACCGCATTAGACAGTTGCTGAATTCCATCAGAATACATTTATGCAAAATTTAGAATGTGTTTCTAAATTAAGTTTGAGTCATTTATTTTGACATAGACATAGGACTGTTTTTCCAAAGAAGGATTTGTTGTCCTTGTTACAAGCGAAGTTATGTAGGTGGGGTTTCCTTAACCCACCTGATCTGCATGATAAATACCAGAACACCATATTGAAAGCAAAAGTAGCCTGTGAAAAAACACCCAAACTGCTATTTGTCATTTAAGAGAGAAGATATGATCAAGATTAATAGAACATATGGCATCTTAAAAGGTCCATATGATACACTTCTGTAGTCACTTTGTTTCAACATTTTAACAAGTCCTTATATGGTTTTACTTGGCAATTTCCCAACCTTTTCAGCcaaatctgttttattattacatttattttactgtttctttaagttccttggatatacagctctaaaaaaatcaagagac

Function

GO: NA

KEGG:

id description
K20315 ARHGAP21_23; Rho GTPase-activating protein 21/23

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44937 lncRNA downstream 148853 608407 ~ 612068 (-) False G33389
TU44934 lncRNA downstream 150258 608407 ~ 610663 (-) False G33389
TU44943 lncRNA downstream 150780 605749 ~ 610141 (-) False G33389
TU44944 lncRNA downstream 150780 605749 ~ 610141 (-) True G33389
TU44939 lncRNA downstream 150780 609053 ~ 610141 (-) False G33389
TU45016 lncRNA upstream 81280 912388 ~ 921646 (-) True G33441
TU45154 lncRNA upstream 322324 1153432 ~ 1156177 (-) True G33539
TU45161 lncRNA upstream 343332 1174440 ~ 1174655 (-) True G33545
XR_002649839.1 lncRNA upstream 887540 1718648 ~ 1720446 (-) True LOC111192344
XR_002649840.1 lncRNA upstream 889703 1720811 ~ 1727257 (-) True LOC111192345
XM_022668861.1 mRNA downstream 25170 714271 ~ 735751 (-) False LOC103026030
XM_022668860.1 mRNA downstream 25529 714271 ~ 735392 (-) False LOC103026030
XM_022668859.1 mRNA downstream 25529 714271 ~ 735392 (-) True LOC103026030
XM_022668858.1 mRNA downstream 30593 714271 ~ 730328 (-) False LOC103026030
XM_022668862.1 mRNA downstream 30770 714271 ~ 730151 (-) False LOC103026030
XM_007234081.2 mRNA upstream 21847 852955 ~ 880303 (-) True LOC103022903
XM_007234083.3 mRNA upstream 51879 882987 ~ 942741 (-) False LOC103023211
XM_007234084.3 mRNA upstream 51879 882987 ~ 942741 (-) False LOC103023211
XM_007234082.3 mRNA upstream 51879 882987 ~ 942741 (-) True LOC103023211
XM_007234088.3 mRNA upstream 155231 986339 ~ 991081 (-) True LOC103024569
TU44781 other downstream 359609 389469 ~ 401312 (-) True LOC111192416
trnaq-cug other upstream 294357 1125465 ~ 1125536 (-) True trnaq-cug
trnar-ccu other upstream 295287 1126395 ~ 1126467 (-) True trnar-ccu
TU45334 other upstream 979478 1810586 ~ 1812622 (-) True G33675
XR_002649841.1 other upstream 1191633 2022741 ~ 2034470 (-) False LOC103022010
TU45452 other upstream 1203986 2035094 ~ 2042274 (-) False LOC103022010

Expression Profile