RNA id: XM_007234089.3


Basic Information

Item Value
RNA id XM_007234089.3
length 4442
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC103025106
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 1046542 ~ 1051167 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAGCAGAGcagacacacatgcacacacacacacacacacacacacaagcgcaGACACAGCAtcatcacaaacacacagcgaGTGGAGAGAGGGAGCGTGCAAATGCATGCTCCCGACGTGAAAGACAGTTTGATAAAGCGAGACCACCAGCGGAGGAGGACTCTTCACTACAGACAGCattggcatcagcagcagctgtggcAGTTTAAAGACCTAAATATACGTCACTGAACTCTCTCCACTGGCTGGCAGCTCTAACATGGGCTGCTCATCCGGACGCCTGCCCTGCCAGCCGCCGGCCCCTGCACAGCTGCCCACTCTGGACCCTGCACTGGACTGCAGCCTGGCTCAGGATGGGGTACCATCTACACCTAAGAGCCCAGAGAATCTCTCCACTCTGGAACGGTTGGCCCAGGCCACTGGGGGCACGGAGAAGTCATGGTACCGCTGCGTATTTCCCTTTGGGGTCATCTCACTGGTGATTGGCATGGCAGGCACGGGCGTCACCTTTACCTTCAACACCCTGTTGCAGACCAAGGTGGTGTCCCTGGTGCTGCTGGCTGTGGGACtgatcatgcttctggtggcaGCTGCCTGTTGGAGGGTCCACAGAGCCAAGAGGAGGGAGAAGAAAGAAGGTGGCTTCTTCTGCTCAGAGCAGGGCACCCTTTGacctgttttatttttccttatttaaAATAAGGACTTTCATATCTTATATCTTTTGTTCTGTGCATGCACTGGCTGGATGTGACGTGATATCTTGATGGAACAAGAACTTTGGAACAAGACTTGCGGATTGAAGCAACACTTTCATGTCATAGAGGTCTTTGTGCTCTATTTATAAATACGAGTGAAAAACTCACAACAGCTTGAGATGTTTAGCACTTTCCTAAAATACTTCATCCTACCACACCACGTGCTGCGAGGAGGAAGCAGTTATCTCCATATGTTTGTCCTCATTAAGGAACCTCATTATTAGAAACAGCACAGTCTCTAAGATCCctcacaatgctgcaagtccatttcacaccaccGTGAACATGTTTCCCCGAAGGAACAACAGGATCAAAGATGCGTAGAAGAGACTGCACTTTCCCTGAAGGGGGGGAAATCATCTCTGAACTGTTTCAAACACTTCCTGCCGGTCAGTTTCTCCAGGAATAGTAATACACAAATGACGTGCCTCTGTGATTAACTAACAGCAGGTCAGTGGAAGAAGCCTCTGGGAAGATTGAGGTTAGTAGGTCTAGCACATGGAAAGAAAAAACTGCTATTTCATGTGCTTTATATAGATAATGAGTTTGGTAAGCTTGGTGTAGCACGTGAGAGAAGACTTCACCAGATAACTTAAGTGTTCCCAGTGGTAGGCAAAAAGTGGACAACATATTGGTCTGCTCTGCATGACTTTGGAGTCAAATGTTTTGTAACTCTCAAGAATGGTGCGTAATGGAGTACGTATGTTGTAATAGGTGAGATATCTTTAGCAGAGATATATTTTTGCTGGTGTTGtgataaaaaaaggtttaaaagatTTGTGCTTGCATGTGTGTTTCCATGAAGTGTTTGTGAAAGCACTCAGGTACTATGTGTGAGTTTCTTATTTATTAGCGGATTAGAGATACTGGAAACAGACAAAAGGTGAAGGGGCTGTCAATCCTAGTTCTGGGGACTCCACAATGTGCACATGTTCGAATGTGTTCTCATCTCACATACATGATTCAACTCATGAACTAATTAAGAATCATATTTGTGGGCTCCCTTGCAGGGGTTGGagcaaacacaaaaatgagtaATGCATGGGGTCACCATGGTCACCATGCTGGACTAGGATTACATCCCTGTTTTAGAAGGTCTTTTTTTCGCTGTTGAACGTGATTTAAGAAGCAGTGAGCAGTGACCTGAAGAAATATAGAGAACAAGAGACTACGGctagagatatacttgctgtGACTGCCTCACGTATCATGTTTCAGTTTGGTGGGTCAGTTCTGCACGTCCTCAGAAATGAATGCTATGTGTATGCAAAGTGCAGTACACATCTAAAGAACAGTAGGGGCAGTAAAGGCACTCagcagtgaataaaaaaaatcagaaagttTTGAAACACGTCTAAACAATTACTGCGATTTATGTTATGTATCTTTAAGGCTTGTTTGTACTTCTGCGTCGAGTCAACGCATTGTCTACGGCATagcttgtgtttgtttgtctgtgacTCACTTCAAACTTGATGTTTAAACAGCAAAGGTAGTTTTAGGAATGTGTGGGTGGGAACACAAGGCTCAGcaaaccaatcacagctgctgctgtccaTGCCACACTACGCATAGTTACATTTCTGGGGAGGTGCACGACAGGTTACGACATAGGCTATGATGTAAGATACGTTGCTACAAGTAGGCTATTGTGAAGGTTCAACGCAAAAGTACAAATCAGATTTTACTCTTGTGGCACATGTAGCACAGTATTTAGGCAGGTATGCAAAATAATTATGGAAATGTGTGGCCAAACAGCAAGCACACctacatgccaaaagtcatggaacagaaATTAATATTACACCCGCTGACTTAGTGCTGGGtgattatggcctaaaaaataatcgtacattttttttcacaaaaaaaatcagacttaCGATTATAATCTATTTTAATCACTACATGGGATGGACCCACAGCTCCCCCGACTCCACACGTCACAGTATGTAAAATCGCGATTACTCCATTTGAAAATCTGTAATTCATAATTTGCATTAATCGAATtcaaattaaccaaattaatctTGTAAATGGCCCAGCACTACCCTGACTTTTGCCAAatgaaaaaagctaaaaaatgaaaatatgtgaAACATCTTCACTGAATGTAGATGTGATTGCTGTGAGTTCATATCTCTAGCCTTACTGTCAATGTTCTGCAGAAACTCAATACTATATTTTCAGCCGCTTTGCACTTAGCAATTCTGTTGTGCCACTGaaaactgaatcattttatcctctgtgaacaaatgaatgtatttattgacTTGATAGGTttaaagtagaaccctgatctGTTGTGTTAAATGGTGATTTCACAATAATCAGCACTGTAGGAAAAATGAACAAGATCTGGATGTTACATCTCTGGTTCTTTAAACTCTGGTATTGTACTGTAGCTTAGGTATATTTTCATCCCTGTGAAAAGGAATGGCagactgtttttgtattttgccTCTATTCTTTCAGTGCCTGTCTTTTTACATCAGATATTTTCTTACTAGCTATCACTGGGGTGTTTTCCAGTTTTGTTTTATACCAGCTCATTGATCCTGTTCCCAAGAATAGCTGTAGCAGCAGACAGAATGAGAGCAATGACGGGGATACCTGAGCTCCACTGAAGACATATGGGCACGATGtaagagatagacagaaaagaccacacacacacacacacacagacacgcatgCATGCCTGGAACAGGTGCCCtctaacgtgtgtgtgtgtggcaggctTATCTTTTGTCCCCGGCAGCTAacgaaagatagagagagaatgagacagaacGAGataaggagggagggagagatggagggagggagagagggagggagggagagtgagTGGCAGAATAAGGAAGGGGGTGGGGGCTTTCATGAGAGttcattgataaaaaaaagcatccGGAAATAGCTCGGAATATAAATAAGCAGTGAGCCCAGCATGAGTCCTGCATTATGTGATGTTCCACCTCACATGCACTTACACATGCTTTATAATGCACTGTAAACATGACTCATAAAAGGTACCCCTCGCATTTCTGATGGGCCTAAGATAAGATATAtcaaataagataaataatgtATTAGTGCCACAGAGGGGAGATTTACTATGAACTAGAACTAAAATATGCACTTGTTCAATGATCCTTtcaaaagagttttttttggaacgatgccacagaagaaccactttgGGTTCcttatggagttttttttttttttttttttttttacagtgaatggACCTTTCACAAGTGTAGGTCTTATATGAAGGAGGAAAGGAACCATAAGAGACTCGTCTATGGCATCATGTAAGgtaagaaatgtaaatgtaagaaaactATATGCCAGCCAATATCTAAAGACACAGTCCAAAGAAAACTGACCCTCCATACATATCAACTCAACTTGAAGTACGAGAAGACTGAATGGGTTCCGAAGGAATTTGCCACATGCTGAGGGGCACATATGGTATATGTAGCTTTTCTTTGCCAGGAGTGTAAATTAgtttaataattagtaaatgAGTTTTTCTGGTACCAGACTGATACCAGTATGAAGCACTgtatgtacatattttttttttttttttaagacattgTATTTAAAAGCTATGTTTATACATTTTGGACTATTGGAAAAGAGTATTAAATACAATGACGcaatgtgaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45016 lncRNA downstream 124896 912388 ~ 921646 (-) True G33441
TU44937 lncRNA downstream 434474 608407 ~ 612068 (-) False G33389
TU44934 lncRNA downstream 435879 608407 ~ 610663 (-) False G33389
TU44944 lncRNA downstream 436401 605749 ~ 610141 (-) True G33389
TU45154 lncRNA upstream 102265 1153432 ~ 1156177 (-) True G33539
TU45161 lncRNA upstream 123273 1174440 ~ 1174655 (-) True G33545
XR_002649839.1 lncRNA upstream 667481 1718648 ~ 1720446 (-) True LOC111192344
XR_002649840.1 lncRNA upstream 669644 1720811 ~ 1727257 (-) True LOC111192345
TU45350 lncRNA upstream 805801 1856968 ~ 1857715 (-) True G33690
XM_007234088.3 mRNA downstream 55461 986339 ~ 991081 (-) True LOC103024569
XM_007234083.3 mRNA downstream 103801 882987 ~ 942741 (-) False LOC103023211
XM_007234084.3 mRNA downstream 103801 882987 ~ 942741 (-) False LOC103023211
XM_007234082.3 mRNA downstream 103801 882987 ~ 942741 (-) True LOC103023211
XM_007234081.2 mRNA downstream 166239 852955 ~ 880303 (-) True LOC103022903
XM_022669428.1 mRNA upstream 18950 1070117 ~ 1112683 (-) True LOC103032113
XM_007257193.3 mRNA upstream 72049 1123216 ~ 1125264 (-) True mrpl58
XM_015607840.2 mRNA upstream 72049 1123216 ~ 1125259 (-) False mrpl58
XM_007257197.3 mRNA upstream 116060 1167227 ~ 1172673 (-) True LOC103038911
XM_022668867.1 mRNA upstream 327821 1378988 ~ 1547752 (-) True dnah9
TU44781 other downstream 645230 389469 ~ 401312 (-) True LOC111192416
trnaq-cug other upstream 74298 1125465 ~ 1125536 (-) True trnaq-cug
trnar-ccu other upstream 75228 1126395 ~ 1126467 (-) True trnar-ccu
TU45334 other upstream 759419 1810586 ~ 1812622 (-) True G33675
XR_002649841.1 other upstream 971574 2022741 ~ 2034470 (-) False LOC103022010
TU45452 other upstream 983927 2035094 ~ 2042274 (-) False LOC103022010

Expression Profile