RNA id: XM_007235380.3


Basic Information

Item Value
RNA id XM_007235380.3
length 3272
RNA type mRNA
GC content 0.46
exon number 5
gene id phyhipl
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 23628687 ~ 23685558 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAGAAGGGGGGAGCGAGGActgacagagagtgagagagcacgTGAGAGGCACACATCCATCCACATTCCCTCCCCCCTCTACTCTGGTCGAtcaagggagagagagagagagagagaaagagagcgagagagggcaCACTcagcctccctccctccctccctccctccttcctcgAGACCCGTCCTGCGGCACGGGCAGTTTCAGTGTTGCAGGCGTTTGGGGGGTAAATACACCAGAATGGAGGTTCCACGACACAGCCTGAGCAGCCCCACCAGCCCCTGCGAGGAGATGATGAAGAACCTGAGCCTGGACGCCATCCAGCTTTGTGATCGGGAAGgaAATAAGTCCCAGGACAGTGGAATCGCAGAGATGGAGGAGCTTCCTGTTCCGCAGCACATCAAAATCAGCAACATCACCTGCGACTCCTTCAAAATCTGCTGGGATATGGACTCCAGGGTAAAGGAACGCATCACGCACTACTTCATCGACCTCAACAAGAAAGAGAACAAGAACGCCAACAAGTTCAAACACAAGGACGTCCCCACTAAACTGGTAGCGAAGGCGGTGCCTCTGCCCATGACAGTGAGGGGGCACTGGTTCCTGAGCCCCCGCACCGAGTACACTGTAGCAGTGCAGACTGCGTCCAAACAGGGCGACGGGGACTACGCCGTGTCTGACTGGAGCGAGATAGTAGAGTTCTGCACGGCCGATTACTCCACAGTCCATCTCACGCAGCTGCTGGAGAAAGCAGAGGCGATCGCCGGCAGAATGCTCTACTTCTCTGTGTTTTACCGAAACCAGCACAAAGAATACTTCGACCATGCCAGGGAGGCCCAAAACAACAAGATGCTGCCGTCAGTCAAGGACAACAGCGGGAGCCACGGCTCCCCCATCAGTGGGAAGCTGGAGGGCATTTTTTTCAGCTGCAACACCGAGTTCAACACAGGCAAGCCGCCGCAGGACTCTCCGTACGGCCGCTATCGCTTCCAGCTGCCCGCCGAGACGCTCTTCAACCCCGGCACCAACCTGTACTTCGCAGACTTCTACTGCATGTACACGGCCTACCACTACGTCATCCTGGTGCTCGCGCCACACGGCTCGCCAGGAGACGAGTTCTGCAAGCAGAGGCTCCCCCTGCTGGACATCGCTGACAACCGCTTCCTGACATGTGTGCAGGACGAGGACGGGCGCCTGACCTTCCGGCATGCACAGGACCTCATCCTGGAGGTCATCTACACAGACCCGGTGGACCTGAGCCTGGGCACAGTGGCTGAGATCAGTGGCCACCAGCTCATGAGCCTGTCCACAGTCAATGCCAAGAAGGACCCCAGCTGCAAAACCTGCAACATCAGTGTGGGCCGCTAGCCGACCTGCTTCACCTTTGTCCTCCAGCTCCCTCTGATGTGTGGTTTGACATATTGCACCCCCATTTcactttttcgttttttttcctgagttttttttctcttaagtTATCTGTAAACTCCTTCCTATTATGGCCTAAAAGCTCCTCCACAGCAGTAGTTTCTAATCCTGGTCCTGAAGTGTCCCTGTCAGGAATATTTTGTTCTAATCAGAGATGTTTTCCAATTAGATGTGGGGCACTTTCAAAGTCACAACTTTCCtaatctgaaaaacaaaaagaacacaacccAAAAGAGATTTAATCACTGTTGTATGAATTATTGGGCTATAGCCACCCATTTCTGTGATTAGATTAGTAGATTAGCACACAAAAGCTGTGTGCTACTACCCTAAGGGCCAGTTTCCTAAACAGGGACAAATTCTAGTCCTGATGATGATTTTTGCATTGAAGGGAGAATTAAAGCCAAATGCCATTTCACTCCTTGGCTCTACCACTTAGCCATACCCCTTCATTTAGCATGTGCTCTCCTAGGGCTACTGTGTCCTAATTCTTGTTTATCTAGTGGGTTAGGTGGAATATCAGTGATTAATCTTCAAACTCTTCAAATTTCTCAAGAATTCAGTCCAGCAGTGTTCAAAGTTCCAAATACCCACTGTGTATTAAAtactaaagtaaatgtaaagtaaaagtaaatgccTCTGGTATGAAtggcataaaattataataaatagcaTAGAAAACTATAgcaattgtttattttgtattaagcaAGTTGCAGCCTGGCAATTTGCTTAgaacacacagcacatttaggctttcatcattataattagaaaaagacacagaaaatattaaaagtataagtcTTCCCTTTtcagaaattacagataaagccAGAGTgcagtgagtactgtttcctacaccttcaaaacaCTCGGGGAGAAAGGGGAGAAAACTGATACATAAAGAGgtttggctgacccacatggcaacggctatagctcagcttaacactaAACAAATTCTCAGtttcagcaattttttttttcaactaaaCTAGACACTAAAGTCTTCAGGACAGGGGTACTCCAGGACCTGGATTTTAAAACACTGCTCTAAAGCATGCAtctcacagtttttaatttctttttgggtttattgtattgtatcccCAAGTTTTCTGTTTGTTGGGGAGTGTCGATGATGGGATTGTCTTTACAGCGTGAACTTTCCTCCCTTAAACTTCCTATTCCAGAGCTatgatgtacatttttttttattttgccaaaGGTGATGACGGCTAACGTAGCCCACAAGGTCAAGCCGCTGTAGTCGACCGATTGTAGCCAAGTTTAACGAGGCATTATAGACGTGTACTAATGAAACACACTCACGGGATCATTCTAAAGAGCATGCTTCCCGCAGCATGACGCTAATACtgataaaaagttaaaagactCCAGCACTTCTGTAGTCCTCGTTGTCGCTGCAGTGTTTCATGTTATTTATTCAAACTGAAAACCACCACTTATGACTGTGTATAACACAAGAAATAAACATGCAGAGgagtataaatagaaaaatatttattttttattggtgtATAGAAAATGGACGGAACCAGAAGTGCACAATACCGAGGGTTTTTTTGTGTGGCAAGTTCACAGTAgagcaaaataaatgaacaagtaaataaataaataagcagaaACTCACAAATCTGCTGCATAAACCAATGCAGAAAGGAACGTGCACTAAAAGCTAACATTCAAATAGAGTAGTTGATCATCGTGGCTGTGTACACTGAACCGAATCCTGTTAAATCTGGAACATAGCAGATATAACACAGAACAAACCACATCTGATTGCAGAACAGttcaacaactttttttttctttttttctt

Function

GO: NA

KEGG:

id description
K24497 PHYHIP; phytanoyl-CoA hydroxylate-interacting protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52086 lncRNA upstream 104817 23520932 ~ 23523870 (+) True G38633
TU52090 lncRNA upstream 104817 23520932 ~ 23523870 (+) False G38633
TU52091 lncRNA upstream 104817 23520932 ~ 23523870 (+) False G38633
TU52093 lncRNA upstream 106098 23520932 ~ 23522589 (+) False G38633
TU52095 lncRNA upstream 106098 23520932 ~ 23522589 (+) False G38633
TU52201 lncRNA downstream 92716 23778274 ~ 23845827 (+) True G38717
TU52193 lncRNA downstream 98407 23783965 ~ 23784746 (+) True G38710
TU52207 lncRNA downstream 144928 23830486 ~ 23951902 (+) True G38723
XR_002649910.1 lncRNA downstream 700178 24385736 ~ 24388302 (+) True LOC107197179
TU52345 lncRNA downstream 740888 24426446 ~ 24426725 (+) True G38832
XM_022669360.1 mRNA upstream 34645 23418853 ~ 23594042 (+) True bicc1
XM_022669361.1 mRNA upstream 34645 23418853 ~ 23594042 (+) False bicc1
XM_007235379.3 mRNA upstream 232309 23387980 ~ 23396378 (+) True tfam
XM_022669358.1 mRNA upstream 628064 22998679 ~ 23000623 (+) False LOC111192392
XM_022669357.1 mRNA upstream 628064 22998867 ~ 23000623 (+) True LOC111192392
XM_022669450.1 mRNA downstream 715560 24401118 ~ 24402659 (+) True LOC111192424
XM_022669371.1 mRNA downstream 946145 24631703 ~ 24648610 (+) True LOC111192396
XM_007235900.2 mRNA downstream 967071 24652629 ~ 24663580 (+) True LOC103037544
XM_007235895.3 mRNA downstream 1011578 24697136 ~ 24713813 (+) True mto1
XM_007235893.2 mRNA downstream 1045342 24730900 ~ 24744132 (+) True LOC103035992
XR_002649894.1 other upstream 2333397 21166568 ~ 21295290 (+) False plce1
TU51357 other upstream 2597890 21019169 ~ 21030797 (+) True G38079
TU51173 other upstream 3470348 20157880 ~ 20158339 (+) False G37943
TU51016 other upstream 4143772 19481056 ~ 19484915 (+) True G37812
TU50913 other upstream 4297026 19329368 ~ 19331661 (+) True G37749
trnar-ccu_1 other downstream 61911 23747469 ~ 23747541 (+) True trnar-ccu_1
trnar-ccu_2 other downstream 62013 23747571 ~ 23747643 (+) True trnar-ccu_2
trnar-ccu_3 other downstream 62115 23747673 ~ 23747745 (+) True trnar-ccu_3
trnar-ccu_4 other downstream 62217 23747775 ~ 23747847 (+) True trnar-ccu_4
trnar-ccu_5 other downstream 62319 23747877 ~ 23747949 (+) True trnar-ccu_5

Expression Profile