RNA id: XM_007239748.3


Basic Information

Item Value
RNA id XM_007239748.3
length 1330
RNA type mRNA
GC content 0.46
exon number 5
gene id lsm12
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17509960 ~ 17517710 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGGCCCGCGAGGGAATGTGTTGAAGTGGGTGATCTCCGCTGCGGAGGTTCTCCGGTTTGTGTCCGCCGTAAAGCGCCGCTCTCCGGGTTTCCCTGGCGGAGAAGATGGCGGCTCCTGGACCGGGGGAGTATTTCAGCGTGGGAAGCAGCGTCTCCTGCCTCACCTGCCTGGGCCAGCGCCTGCAGGGAGAGGTTGTGGCCTTTGATTACCAGACCAAGATGTTAACTCTGAAATGTGCTTCTTCCAGTGGCAAGCCCAACCTCAGTGACGTCATCCTGGTTAACTTAGCCTACGTTTCAGAGGTGGAAATCATTAATGATCGTACTGAGACACCACCTCCTCTAGCATCTTTGAATGTGGGCAAGCTTGCCAGTCGGGCGAGGACGGAAAAGGAAGACAAGTTATCCCAAGCCTACGCAATCAGTGCTGGGGTTTCAGTTGAGGGCCAGCAACTATTCCAGACTATACATAAAACCATCAAAGACTGTAAATGGCAGGAGAAGAACATTATTGTGATGGATGACGTCGTAATCTCACCGCCGTATCAGGTGGAGAACTGCAAAGGAAAAGAAGGAAGCGCTTTAAGTCATATACGCAAAATCGttgagaaacattttaaagatgTGGAATCTCAGAAGTCGATGCAGCGTTCACAAGCACAGCAAACACAGAAGGACTCGTCGTTATCTTCCTGAGGGGGGAAGGGGCGAGCGTGGTTCGGCCAGAGAGGGCACCACGGGCATCAGCGCTCTGAGAGCCGGACGAGAACGGCGCTCCCCTCTCTCCTACCCCTCCCCTTCAGCGCCGCAGTCGGAGGGCGGGGGATACCAAGACCCCAGGGTCTGCAAgatcaaacaaaaacaaatgaaaaacattaaaaaaaaaaaaaaaaaaatcagaaaaagtgaGGGTGCAAAGAGTTAATTCTAAAATTAGATTTATAAAGATAATTTAAAATACCAATTATTAAGAAACCCATAGTTTTCCTGACTAACTTCcatcatctttctctctctctatctctctctctatctctctctatctctctctttctctctggcccTTCTTCCTCCTTCTCTCCTATTCTTCTCTCCTTTCATTTTCATCCCTCCTTCGCCTTCTATTCCATTCtgtcaaaaaaggaaaaaaaaaacaaacagtcaGAAAAGCTTGTtagctttttgttttcttcccccaaattttccttttttgccATCTTCATGTTCATGtgtctgtattttctgtattttaaacaaaaatgtgactTGAAATGCCACACTTTAAAAAACGGACGTTTTCTAAAATAAAGGAACAAAAATTCTGACTGTAA

Function

GO: NA

KEGG:

id description
K23643 LSM12; protein LSM12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50288 lncRNA downstream 15545 17488885 ~ 17494415 (-) True G37298
TU50290 lncRNA downstream 15545 17488885 ~ 17494415 (-) False G37298
TU50286 lncRNA downstream 33124 17473910 ~ 17476836 (-) True LOC103025140
TU50244 lncRNA downstream 119539 17385841 ~ 17390421 (-) True G37274
TU50220 lncRNA downstream 172638 17335591 ~ 17337322 (-) True G37254
TU50307 lncRNA upstream 35862 17553572 ~ 17555922 (-) True G37309
TU50339 lncRNA upstream 188024 17705734 ~ 17708605 (-) True G37333
TU50357 lncRNA upstream 272244 17789954 ~ 17795977 (-) False vps25
TU50502 lncRNA upstream 608824 18126534 ~ 18126807 (-) True G37443
TU50503 lncRNA upstream 609544 18127254 ~ 18127560 (-) True G37444
XM_015603206.2 mRNA downstream 5143 17500469 ~ 17504817 (-) True LOC103024821
XM_007239750.2 mRNA downstream 33082 17474584 ~ 17476878 (-) False LOC103025140
XM_022669228.1 mRNA downstream 43289 17442641 ~ 17466671 (-) False LOC111192380
XM_022669227.1 mRNA downstream 44202 17442641 ~ 17465758 (-) True LOC111192380
XM_022669439.1 mRNA downstream 71468 17431006 ~ 17438492 (-) True LOC111192420
XM_022669440.1 mRNA upstream 16993 17534703 ~ 17689384 (-) True LOC103025753
XM_007248767.3 mRNA upstream 174794 17692504 ~ 17705023 (-) False cntd1
XM_022669229.1 mRNA upstream 180720 17698430 ~ 17705021 (-) False cntd1
XM_022669441.1 mRNA upstream 193290 17711000 ~ 17784278 (-) True wnk4
XM_007248682.3 mRNA upstream 272683 17790393 ~ 17795988 (-) False vps25
TU50265 other downstream 43936 17432972 ~ 17466024 (-) True G37290
TU50267 other downstream 46643 17432972 ~ 17463317 (-) False G37290
TU50205 other downstream 128363 17374184 ~ 17381597 (-) True LOC103024241
TU50180 other downstream 325555 17179378 ~ 17184405 (-) False LOC103030148
trnal-uag_1 other downstream 414634 17095245 ~ 17095326 (-) True trnal-uag_1
TU50318 other upstream 66340 17584050 ~ 17653785 (-) False LOC103025753
XR_002649888.1 other upstream 174787 17692497 ~ 17705023 (-) False cntd1
XR_002649887.1 other upstream 174788 17692498 ~ 17705023 (-) False cntd1
XR_002649886.1 other upstream 174788 17692498 ~ 17705023 (-) True cntd1
XR_002649889.1 other upstream 272241 17789951 ~ 17795986 (-) True vps25

Expression Profile