RNA id: XM_007248687.3


Basic Information

Item Value
RNA id XM_007248687.3
length 7647
RNA type mRNA
GC content 0.43
exon number 7
gene id maz
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17822758 ~ 17836906 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gaaaGGGAGAAGGGAGagggggcgagagagagagcaagagagagagagcgataaaaaaagaaagatgacATCGAGCGAGTGGAGGCGCCGAGGCGGCCGGGCTCAGGCTGTGTCTGCCTCGGCCACGGCGTGAACTCAACACCGAGGCTTCGACTAAACAAGCGCAGCCGCGGcctgttagttagctagttggTGGGAGGGAGGaaaggagggagagaaggaggggGGAGAGACACTAAAAGCAACAgagatttagctatttattattaagcgttattttaaccttattttaacctagctaaaaccaaGCTTATTCCACTGTCTGAAAGActacagcaacaacaacagcagcagcagtagagcCTCTTTAACGCCGTGTTTATTTTCTTCTAATGCATGATGTAAACGTAGAAATGACAGTATTCTATGAAGCATATTAAAACTGAATGCTGCGAGTTTGGGATCTGTAGTTAAGTAGTTTGTCAGGGAATAAAAAGCTCATCTCATTGAGTTGCACTGGTCTGTGAAAGTCGCGTTAAGATTATCATCCTCATTAGCAGCTGGAGAAGCATTCGGGTTAGAGAGAGATTCTGCTTCTAAAGCTATACAGGGGGATGAGGAGAAGCAGCTGAGGAGAAAACCTCACAATCTACAGTTTTATCCTCCTTCACTTCTGAACAAAATGGATGCTTCTTGGAGCAACTTTCTCTTCCAGACCACGGGTGCTCAGACCCAGGTGGATGGCAGCCTCCAGGCCGAGCTCATGCCCCAGAGTCCGGCCCCCGAGCACATGGCACCACccccatccacagtggacacaGCGGCACTTAACGAGGACCCTGAACCTGTGAAGCCACCACCCCGCCCTGCCCGTGTGGCACACATTTGTGCCATCTGCAGCAAACAGTTCAAAAACAGCTACAACCTGCGGCGCCACCAGTCCGTCCACACCGGCATCCGCATGAAAAGCGGCTCCTCTCAGAACCAGGAGGGCGGCGCTAAAGAAGTGGTGGAGCGGCCCACCGTTCCTCTTTCCCTCCTTCAGCTGACGATGCCCGAGCCCCAGGCCCCCAGCCTGACGCCTCAGGACATGCTTCCCACCCAAATGCCCCAGCAGCCCCTGGTCGCACAGGACACGAACGAGTCGGTCATGGTCAGCGTGGCCTCCACTGTTACAGCCCTTCCTCCCGCTGCAATAGTAGTCATGGCAACGCCAGAGCCTGTACAGgTTCAGCCGAGGCCGCCGAACCCGAACCCTGTGAGAAAGAACCACGCGTGTGAGACATGCGGAAAAGCCTTCAGAGATGTTTATCATCTGAACCGGCACCGGCTCTCTCACTCAGACGAGAAGCCCTTCTCCTGCCCCATCTGCCAGCAGCGCTTCAAGAGGAAAGACCGCATGAGCCACCACGTCCGCTCCCACCAGGGCGGGGTGGAGAAGCCCTACATCTGCCCCCATTGCTCCAAGGCCTTCTCTCGCCCTGACCATCTCAACAGCCATGTCCGACAGGTCCATTCTTCAGAACGACCTTTTAAATGCCCGACGTGCGAGTCGAGTTTTGCCACGAAAGACCGCCTGCGTGCTCATATGATACGACATGAGGAGAAGGTGCCGTGTCACATATGTGGCAAACTGCTGTCTGCCGCATACATCACTGATCATATGAGAGTGCACAACCAGTCACAGCATCACGCCTGCCACCTGTGTAACCGAAGCTTCACCACGCTGACCTACCTGCGCATCCACGCTCAGAAGCACCACGGTCAGGAGTGGAAGGAAAGCAGTGGTGGATTTGGCTCAGCCGGAGCCGGAGGAGTTCTGGTCTGCCAGCTTTGTGGTGTCCACTGCAAAACCCCCACGCAGCTGCAGGGCCACATGGGCACCCATAACCCCCCAATGAACGACCCAGCGCCGGTGAGCAGCAGCTCGGACGGAGTGGCATCGGCGGCCGGCACAGTGACCCTGAGCAGCATGACTTCTGCGCCCACCGTCTTCGTCAGTGGCAACGCAGTGGTGGACCTGCTGGTCACCGACTGCTCCTGCATCGCCCAGCAGCCGCAGAGCTAGTAACTGCagcttacacaaacacacacacactgcccggTAAAAGATTTGGGACATTTAGCAGTCtagaatgtttttcttttcacttttattttcagataAGTGAGAAAAAACAGCCTGCAGTGTTGCTGTATCATAAAAACTGACCTGAAATTGCCCTAGCAGttttggaaacaaaaaaaaatgagactttaatgtagtgtatattaacattgtgaaagttaaaaaatgtaaagtttacaTGCTAGTTTACAAAGTTCAGGTCCATACTTACAAAAAAGCAgattaaccccacccattccaaCTCTTACGTGTCCACTAGCACTTAAGCCTTGATGCATccttttaattttaacagagagagccgctgcatgccaGTGGCTATTGATCGCAGCCCCACCCtctgaaaaagtgaaaaagttcagcagagctcaactttattcaaatgagcAGGCTGCGacttcacacacatacaagcctcacacacacacacacacacacaacagccgcctttcaaccacagaagagaagcaAAAAATGACGTAAAATgaatttatagaactatagattacAATGCGattgattaaaaatcttaaatattaaacttatgatttcctacatctgttgcttcatttaaatTCAAAACCGTCATGGACTCACCCACACGGAGAACCCAGAGATTCGGCACATTGAAATGCGTTGAAGAAAAGTGCTAGTGGACACGTACcattagcctacagcagtttagtagAGAGGATcgagtgatgttttttttagaggTCCATTACTATTTCAGTCTTGTTGCACGTCTGTGTgaacaatacaaaatacagggcagccaatcagaactaaGTAGTATTAAAGGCacaattaaaaaagaagaaaaaaaagaacactgtgCTTTTTTTGTAATGCAAAAATAGAGACtgggctgtttttttatttgatttttttgataGTGTATgtctttacataaaaataatgtctGTTTGCCAGCGAGTCGCTGAAAAAAAGTCTCAGGATAGCATTAGGGTTAATGCAAAAGTCAGCCTGGACAGAGGGGCCGGCTTAATAATTGTAaaactgcttttatttattcacacaaagaaaaacatttccCAAACATGGGCCTGTCATACTGCATGTGTTTTATCTGCTGCCCCTGCTTCCAAAACTAATGTACACCAGACCTTCTGAAACTGAGAAATCTCCCACAATCCATACTTGCAGCCTGATTGCGTGAAGAGCTGCACGCTAGGCACGCCACGGTCCACAGCCTTGCATTAGCCTGATGACCCAAAGTGGGGACACTAAAGGGGTTTAGAGAGCAAGCGCGCTGGAGCACACGCAGAACTGTTGGCATGGCAGTACGGCTCATTTTTGCATTCTGATAaagaaaactctttatttgtatgaaagaaaatattttgGGAAACTAAGTTCTCTCAGTCTTTTGATGGGCAGtgtacacagtcacacacatctACACGCACTAAGCTAGCGAAGTGTGCATCATGCACATACCTTACTGATACCTAGAACATGTTTATAAGAATGCTATATGCTATAACCCTCCAATAGAAAACCACACTACTAGAGCAAATACTGTGAACAGAGCCATCATACAATTAGCTGAGCAGCACTCGTACAGAAACTCAGCAGCTACTGTAGCAAATAAGTCACCTCAGTAAGACATGCACGATGCGTGCAGAAACGCTACACACGTCTCTCCATGGCAGACGTGCGGCTGGCGGACGTTCAACGGACTGTCTCAGATTTGCCAAGGTGAGACTGCTGAGAGGTCAGCAGGAGTAGAGTAATGACGGACACTGTGTCTCAAATCGAATACTTCTATAGTGCAGTGGCATGTTGGTACCAGAAGATGCGTGCTAGAACTGCAGTCAAAAGATGCGTAGAATGTTGTAGTCTATACTCATGTAGAGTAGAACAGGTGGAACCATCAGAGGAACCTCCAGTTTAAATTTTCAGATGCGAGTTGGACATGTTCGTCCTTCCATACAGTGATAttagtttttttggggggggctGGCTCGAATCATTTTAACCCTCAAGTAATCATTCTTTACTctgagatttatttattttgtctcaAAGCAGCGTTATGCTagattttgtccttttttttttttttttttttttttttttttttttacttcaatcAATTTTTTActccactgcagtaaatacaaatcCCCTGATGAGCTCTCTCTCATGGACAGCTGTACACATACGTTTGTACTgggaaagaagcatgtggactgaggcgtTAGAAATATtgtacaggattttacactaatatgacTGAGCAGTTTTTGTGAGAGATCTTGTTCAGCTCCACCGAAGTTTTGTAGTGCTGTAGTGGCGTAAACTTATATATATGCTGTACCCATACTGTCTCTTAGCATCAcatcatttaatatttaatattatcaaagctaatttcagttcatttgcaCCATTGCACATCTCTTTACTGTTAGTTCATCCCTGCCCTCTACTGGATTTAAATTGAGCTTCGATAACCAAGATACTTAAAGTTATGGTTTAATGGTTAAATTTGTAAAATGCTCTTCGGGCCAGCTCTAGTATTTGCAGTATTATGCTGCAAAATGCTGTAACAACCATGCATCTAGCTAACTTGATTTAGCTCTGTGAGGTTCTCTGATATATCCATTACCTGGAAATCATTACTGCTCCAGTTGAGATTATACTAATTTACTGCGGTCTGGGCTTTGGACAGTAAAGGACACAGTGTGTAGATTAGGAATCTAGTTCGTCTTGCCCGACTtgagacacagggagaacagaAGGCTTTGAGATGGACGTTAGAGCAGATGGAGACTAATGATTTCAGTACCAAGTAGGAAAAACAAATGCCACATCGCACTGTTGCACTggctggttctctctctcttttctttcagaatctttctttgcttttcttGCTGCAGGACTCTTTAACGATACTGTGATTGTGACTCTCTACTGTAGTGTTTCTGCTCTTTGACTGAGTGACGACAGTTTGCTTGACCTTCCAGATCACACCCTCATCCCATTCACCCCCTTTGCTGGAGATGCACTCTGATTTTCTCTATTCTACACAACTTACCACTTATCAACTTATCTAGAAGAAATGAAATTGCACACAAGCTGTTTGGGCAGACTTTTGTCTGGTAAGCAACCAGAACAGGAGAAAGACAGGTCTGTCTTTtagcatattaaaaaaaaactaaccaagCTGAAACTTAGTCAAACAGattcctaaaagtagataaagaagacccatttaaacaaatgagacaaatatattatacttggcCATTTATTCATTgagtaaaatgattaaattttacatatttgtgagtTGCGAAAGTATGTTTATCTGGTGTGAGCCCTCTTTGCAGCAATAACTGTGACTAAACATTTCTGGTATTTTCTTCTCTAGAAATTCACTTCTGAGCTGTTCGAAAAGGCTATTTGGGGTTAAATCAGGCTAAAATACTGTAGACAATGTCCGGCCTAAACTacaaagaagcaaaaaaaatatttaaaaaaatagaggagattaaaaaaattaatcattattatcaCCCAGACTGGGAAGAATTACAGTGAAACATTAATACGGATAAATTAGAGCTCTAAAGAGCTTTTATGAATGTTACAATCACCTGCAGGTGGGTCTGAAAAGGCGCATATAGGaaatatttataacacatttacaaaaaaggTAACTGTTTACAGTAATGTCAGATTTTGCTTATTATAAATAGTATTATTTATGGCTgtattaaatgcattaattgCATCTGTTTAGAGTTTAAACTTGTCACTGTCACAAAATTTATCTGTGAATTAGCTGTTACTAATATCGAACACAGTAGGGTGTTTGATATTATTGGTCCTGTAATTTAGTTTGGGTGCATCTCTGGTGAAAGACAGGGTGTAAACCAGGGTGTTGCGGGAAGGCAAGAGGGAAGGAGCAAAGATTTTCTCAATAAATCAGTCACTTTCCTCCAGAAATGAAAttccccccaaacacacacacactcaagggAGCTCAAGGGAATGCTTGCCTGAGCGGTGCTTTGGGGATGTGTGTGTACCGAAGTGTGTATTATGTAATGTGGACAGATAGGGGAACTGTCTAGAATGCTATGCCAGAAACATGCTTCACGCAAGTCCACAAACGCCAGCAGCAGGACAGTAGAGTATGGATTGGAGAACCGGCTCAAAACGTGGTAATGGTTATCGAGTGATTGCATCAGTTGTTCTCAGCAACTCCCAAATAGCCCATTTTTTGAGAACCACcagctcaaataaaaataaaaatcatgaaaactTGTAgtaaatgttaatatgttaaaatattagaataatcCTAACAGAAAGAGTGGCTGTTAGCCGACCAAACAGATTTAGCAGCTAGTGTTCTCCTGCAAGCGTGTTGAGCTCCAGAGGTTTTATGTTGATTCTAGGTAGATGTTGGGAATCTGAGtaattcagtaaataaataccTTAATTATCGAAGAGATgatggaaaatgtaaaaataatttaatttatagttacaAGCAAAAAATGTGGAAGTTTGTTTAGTCATGTCCAATTTAGCCTTTACAGATTTATGATTAATCTGTCTTCCATTTTCAGggtttttaatctgttttacaCTTACTATCCTACGTTTACcgattgtaattttttaaacgCCAAACAATTGTAAATTATCGTTTAGCAATATTGATATTAGGTTTAGTTGCATGTTGGTTATTAACTGTTATGTTTTTGAGCAGCCTGATTAAAGAAGTCCACCATTGTAATTTTTTGCATGGTGGATGTTAAGATtagaaaaaatgtcaaaaatattactttatatttttatgattcTCAATATTTATAACAGTATTATGACGGACAAAAGATCTTATAGTGCAGGATATTAAAAACTGctaataaaaacagacaaacatttGAATAAACTCAAATTACAATAGATTTAAGATGCATATTTTGGTTGTGGGTTTGTCCTGCTGAATGCAGATTGTTCTTGTATTTGCTGCGTAGCTTGAAGCGTTTGTGTTCACACACTTGCGTAAAGTACGTTTCTGGCTTTGGTGGCTGGATAAAGTAAACAGAGCAGGAAATGAATTCAGGATTGTCTGACACCTTAAAGGCGTTCAGCAGGATATCTGTTCTCCTGTTAGATTAGTTTAGTTTCCTCagtgttttgccattttcacACTAACTTTTGAGTTGGTCCAGCAAGATCTCACATTAAGACTTTGGAAAGAAATGTAACTAGATAAACTAactagttttatttttctttccttaagtgaaaaaaaaccctcaaactGAATGAATGCATCTTTTTCTGCTTccaagaagacaaaaaaaattacctttAGCCCGTGACTATTTTCTCATTGTTGTTTCTgttgtgaatgtgtgaatcaaGTGTTTGAACGAAGGGCTTCGTCAAATGATCCTGACCTTAAAACCCAGAAATGAGCGTCTGATTTCTCCGTTCAGAATTTAAAAAGTGATATTTggggggaa

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50357 lncRNA downstream 26781 17789954 ~ 17795977 (-) False vps25
TU50339 lncRNA downstream 114153 17705734 ~ 17708605 (-) True G37333
TU50307 lncRNA downstream 266836 17553572 ~ 17555922 (-) True G37309
TU50288 lncRNA downstream 328343 17488885 ~ 17494415 (-) True G37298
TU50502 lncRNA upstream 289628 18126534 ~ 18126807 (-) True G37443
TU50503 lncRNA upstream 290348 18127254 ~ 18127560 (-) True G37444
TU50508 lncRNA upstream 301043 18137949 ~ 18139122 (-) True G37449
TU50509 lncRNA upstream 303886 18140792 ~ 18141076 (-) True G37450
TU50510 lncRNA upstream 305101 18142007 ~ 18142377 (-) True G37451
XM_007248686.3 mRNA downstream 2478 17803734 ~ 17820280 (-) False LOC103047174
XM_007248685.3 mRNA downstream 2478 17803734 ~ 17820280 (-) True LOC103047174
XM_007248682.3 mRNA downstream 26770 17790393 ~ 17795988 (-) False vps25
XM_022669441.1 mRNA downstream 38480 17711000 ~ 17784278 (-) True wnk4
XM_007248767.3 mRNA downstream 117735 17692504 ~ 17705023 (-) False cntd1
XM_007248689.3 mRNA upstream 2521 17839427 ~ 17872154 (-) True taok2
XM_007248692.3 mRNA upstream 67298 17904204 ~ 17918797 (-) False LOC103022355
XM_007248691.2 mRNA upstream 67298 17904204 ~ 17910923 (-) True LOC103022355
XM_022669244.1 mRNA upstream 92401 17929307 ~ 17939085 (-) True prodh2
XM_022669239.1 mRNA upstream 104944 17941850 ~ 17960291 (-) False LOC103023166
XR_002649889.1 other downstream 26772 17789951 ~ 17795986 (-) True vps25
XR_002649888.1 other downstream 117735 17692497 ~ 17705023 (-) False cntd1
XR_002649887.1 other downstream 117735 17692498 ~ 17705023 (-) False cntd1
XR_002649886.1 other downstream 117735 17692498 ~ 17705023 (-) True cntd1
TU50318 other downstream 168973 17584050 ~ 17653785 (-) False LOC103025753
XR_002649891.1 other upstream 445584 18282490 ~ 18317957 (-) False LOC103047479
TU50696 other upstream 735785 18572691 ~ 18573176 (-) True G37603
TU50715 other upstream 796672 18633578 ~ 18635098 (-) True G37616
TU51149 other upstream 1981362 19818268 ~ 19825652 (-) True c4h10orf128
TU51712 other upstream 4036414 21873320 ~ 21878377 (-) True G38338

Expression Profile