RNA id: XM_022669242.1


Basic Information

Item Value
RNA id XM_022669242.1
length 3289
RNA type mRNA
GC content 0.52
exon number 22
gene id LOC103023166
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17941850 ~ 17960291 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCCTGTCTCTCGCCGGAAGTGAGCGATACGGCTCGTAGGCGCACGCTGCCAGTCCGCGCGGATAAACTGCAGATCTGGATCAAAACCGTAGCCCGATCATCCCTGTACCCGGACTCGATACCCGTTCCGCCCGCTAGCAGTGATCAAGACCTTCAGCGATGTCCCGTTTTTTTGCTACTGGATCCGACAGTGAGTCGGAGGAGTCCTCATCCGCCGAGGAGATCACTCCTAAAGCAACCGGAGCTGCTTTCAACAAGCAGAATCTGTTGCTGAGTGATGATGAGGAGGACACTAAAAGAGTGGTACGAAGTGCCAAGGACAAGAGGTTTGAGGAGCTGACAAACCTGATCAAGACCATCCGCAATGCTATGAAGATCAGAGACATGGCGAAATGTCTGGAAGAGTTTGAACAGTTATGTCGAGCGTTTTTAAAGAGTAAAGCGATCGTGGATAAAGAGGGAGTGCCACAGTTTTACATCCGCCTTCTTGCTGACCTGGAAGATTACCTCAACCAGTTATGGGAGGacaaagaaggaaagaagaagaTGAACAAAAACAACGCCAAAGCCCTCAGCACCCTGCGCCAGAAGATCCGCAAATACAACCGGGACTTTGAGACAGACATTGCGAACTACAAGGAGAACCCGGAACAGTCagcagaggaggaggaagagaaggaggaagCTGAATCtgGTTCATCCATGGATAGTGAGGACGATGCTGAAGAAAGTGCCACCGCTAAAAGCTTCATGAAGAAGAAGCCGGCAGCTGAAGCAGCTCCTGAGGCCAGCAAGTTCCTTAAGGGAGCTGATGATGAATCGGACAGCGGCAGTGACGACGATGATGAAATCTGGGGGTCTGACTCCACAGACAGCGGCAGTGAGAGTGAGGACAACGAAGGAAATGCTGGCTCTCTGGCTGTGGCCTTCCTCAAAAAAGCTGCGATGGATGGAGACAGGATGGGCGATCGTAAGAAGGAGGACCGTAAGAAGAGGAGCAAGAAGAAGGAGCGTGCTGAGGAGGAGGCCGAGGAGGAGGCCCTGGAGATGGAGGGAGGAGAGTGGGAGAAGGTGAAGGGAGGCGTGCCGCTGGTGAAGGAGAAACCGAAGATGTTCGCCAAGGGCACAGAGATCAATACGACTGTGGTGGTGAAGAAGCTGAATGAGATCCTGCAGGCTCGAGGAAAGAAAGGAACAGACAGAGCTGCTCAGATTGAGCTCCTCCACGCTCTGGCAGCAATTTCAGAGGAGCACAACCTTGGACAAGGCATCTCTGTGAAGATCAAGTTCAACATCATCGCCTCCCTCTATGACTACAACCCCAACCTGGCAACATTCATGAAGCCGGATATGTGGAAGAAGTGTCTGGATTGCATTAATGAGCTGTTGGACATTCTGTTTGGTAACAACAACATCTTCATTGGCGAGAACATCGCTGAGGACAGTGAGAACCTGGCCGTCTCTGAGCAGCCTTTCCGTGTCCGTGGCTGCATCCTGACCCTGGTGGAGAGGATGGATGAGGAGTTTACCAAGATCATGCAGAACACGGACCCTCATTCACAAGAGTACGTGGATAACCTGAAGGACGAGGGCTGTGTGTGCAACATCATTGACCGGCTGCTGCAGTACCTGGAGAGTAAAGGCAGCACCGAGGAGGTGTGTCGTGTCTACCTGCGCAGGATCATGCACACCTACTACAAGTTCGACTACAAGACCCACCGCCGCTCCATGGGCATTCAGGGAGAGAGCAAGTCTGAGCAAGACCAAgaagagagcgagggagaggaCAGTGCAGTCATCATGGACCGTCTGTGCAAGTTCATCTACGCCAAGGACCGTACCGACCGCATCCGTACCTGCGCCATCCTGTGCCACATCTACCACCATGCACTGCACAGCCGTTGGTACCAGGCCCGCGACCTGATGCTCATGAGCCACCTGCAGGACAACATTCAGCACGCTGATCCTCCAGTGCAGATCTTGTATAACAGGACCATGGTGCAGCTGGGCATCTGTGCCTTCCGCCAGGGGATGATCAAAGACGCCCACAATGCACTGCTGGACATCCAGTCGAGTGGCAGAGCCAAGGAGCTGCTGGGTCAGGGCCTGCTGATGAGGAACATGCAGGAGAGGAACGCAGAGCAAGAGAAGATTGAAAAGAGACGACAGGTGCCTTTCCACATGCATATCAACCTGGagctgctggagtgtgtgtacCTGGTTTCAGCCATGCTGCTGGAGATCCCCTACATGGCAGCCCACGAGTTTGATGCTCGCCGCAGAATGATCAGCAAGCAGTTCCATCACCAGCTGCGAGTGGGCGAGAGACAGCCCCTCCTGGGACCCCCTGAGAGCATGAGGGAGCATGTGGTGGCTGCCAGTAAAGCCATGAAGATGGGCGACTGGCGCACTTGTCATTCATTTATCATCAATGAGAAAATGAACAGCAAAGTGTGGGACCTGTTCCCTGAGGCCCAGCGGGTCCGTGAAATGCTCGTCAGGAAGATTCAGGAGGAGTCTTTGCGCACCTACCTGTTCACCTACAGCAGTGTATACGACTCCATCAGCATGGAGACTTTATCAGAGATGTTTCAGCTGGAGTTGCCCACAGTACACAGCATTATCAGTAAAATGATCATCAACGAGGAGCTGATGGCGTCTCTGGACCAGCCCACTCAGACAGTAGTGATGCACAGAACAGAGCCCACCTCCCTGCAGAACATGGCGCTCCAGCTGGCTGAGAAGCTGGGCGGCCTAGTGGAGAACAATGAGCGTGTCTTTGACCTCAAACAGGGCGTCTATGGAGGATACTTCAACAGAGATTCAGACCAGAGGGGCGGTTACCAGCAGAGGCAAGGTTACCAACGAGATCAGAAAGGCTCCTACCAGCAGAGGCAGGGCGGCTACCAGCGAGGAGGATACAGGTCCCAGAACCAGGGCTCTTACTAAAACCCAGCCCGGTAGAAGCAGGACCCGCTTTCATTCCAAGACCAGACTGCCGCTTCCTGAGCTtgacttcttcttctttccaTCTCTATAAAGTTCTAACATCTCCTCTGCTTCTCCACTCCACCTCAGCCTGTTTAATCACACTGTACAGCTTATTCATCCAGACCTGCAGACTGTATTTCTGTTTCAATAGATTTGCTTTCCCTCAGTTCACCCTTCTTTACAGTGAGGTTCAGGTCTGTGTGAAGCAGGATTTTAGGTAGAAGCTTGGCAGGTTTGTTCTTTGTGtgatttatctgatttaaaacaataaagttaTTCAATTTCTGAAACAGTCACA

Function

GO:

id name namespace
GO:0001731 formation of translation preinitiation complex biological_process
GO:0006446 regulation of translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0031369 translation initiation factor binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50357 lncRNA downstream 145873 17789954 ~ 17795977 (-) False vps25
TU50339 lncRNA downstream 233245 17705734 ~ 17708605 (-) True G37333
TU50307 lncRNA downstream 385928 17553572 ~ 17555922 (-) True G37309
TU50288 lncRNA downstream 447435 17488885 ~ 17494415 (-) True G37298
TU50502 lncRNA upstream 166244 18126534 ~ 18126807 (-) True G37443
TU50503 lncRNA upstream 166964 18127254 ~ 18127560 (-) True G37444
TU50508 lncRNA upstream 177659 18137949 ~ 18139122 (-) True G37449
TU50509 lncRNA upstream 180502 18140792 ~ 18141076 (-) True G37450
TU50510 lncRNA upstream 181717 18142007 ~ 18142377 (-) True G37451
XM_022669244.1 mRNA downstream 2765 17929307 ~ 17939085 (-) True prodh2
XM_007248692.3 mRNA downstream 23053 17904204 ~ 17918797 (-) False LOC103022355
XM_007248691.2 mRNA downstream 30927 17904204 ~ 17910923 (-) True LOC103022355
XM_007248689.3 mRNA downstream 69696 17839427 ~ 17872154 (-) True taok2
XM_007248687.3 mRNA downstream 104944 17822758 ~ 17836906 (-) True maz
XM_007248697.3 mRNA upstream 1640 17961930 ~ 17971020 (-) True ppp4c
XM_022669442.1 mRNA upstream 12298 17972588 ~ 17986489 (-) True LOC103023915
XM_022669245.1 mRNA upstream 31777 17992067 ~ 18015094 (-) True LOC103046263
XM_007248698.3 mRNA upstream 82752 18043042 ~ 18056729 (-) True aldoa
XM_022669248.1 mRNA upstream 140276 18100566 ~ 18117853 (-) False LOC103046869
XR_002649889.1 other downstream 145864 17789951 ~ 17795986 (-) True vps25
XR_002649888.1 other downstream 236827 17692497 ~ 17705023 (-) False cntd1
XR_002649887.1 other downstream 236827 17692498 ~ 17705023 (-) False cntd1
XR_002649886.1 other downstream 236827 17692498 ~ 17705023 (-) True cntd1
TU50318 other downstream 288065 17584050 ~ 17653785 (-) False LOC103025753
XR_002649891.1 other upstream 322200 18282490 ~ 18317957 (-) False LOC103047479
TU50696 other upstream 612401 18572691 ~ 18573176 (-) True G37603
TU50715 other upstream 673288 18633578 ~ 18635098 (-) True G37616
TU51149 other upstream 1857978 19818268 ~ 19825652 (-) True c4h10orf128
TU51712 other upstream 3913030 21873320 ~ 21878377 (-) True G38338

Expression Profile