RNA id: XM_007248697.3


Basic Information

Item Value
RNA id XM_007248697.3
length 2092
RNA type mRNA
GC content 0.46
exon number 9
gene id ppp4c
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17961930 ~ 17971020 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGTTGTCGGCCTTTAggcggcgagagagagagagggctggTGATGTAAACTGGATGGCAGGCGGAGGGAGGCGCTGAAAGCCGGTAGGACGACGAGCCGGTGGAGCAAAGAGGGGAAAAAACGGATCTCACTTAAACTTAATTCGATTTAACTTGAACCCACTGAACGTGAGATCGAGGCGGATCAGGTGGCTTCGCTCGCATTCGTCCTGCCCTCTCTTAGCTCCTTTACgtagtgtgtgtctgtctgtctgtctatttgtctgtgTGCTGGCATTGTCTGTCTGTGAGGTGCGCTGTGAGAGGCCGTGTGGGTTGCAGGAGGCTGTGCACGGTGACGCGAGTGTGTGGGGAGACACAGGCAGACTCTGTTTGGGCCGTTCACTATGGGTGACATCAGCGATCTGGACAGACAGATTGACCAGCTGAGGAGGTGTGAGCTCATCAAGGAGAATGAGGTCAAAGCCTTGTGTGCCAAAGCCAGagAGATTCTAGTAGAGGAGAGCAACGTACAGAGAGTGGATTCTCCAGTTACAGTGTGTGGTGACATCCACGGACAGTTTTATGACCTGAAGGAGTTATTCAGAGTGGGTGGTGACGTTCCAGAAACAAACTACCTCTTTATGGGAGACTTTGTGGACAGAggtttttacagtgtggagACTTTCCTCTTGCTTCTGGCCCTTAAGGTTCGCTACCCAGACAGAATCACGCTGATCCGGGGGAACCACGAATCCAGGCAGATCACACAAGTCTACGGCTTCTACGACGAGTGTTTGAGGAAATACGGCTCTGTTACAGTGTGGAGGTACTGCACGGAAATCTTCGACTATCTTTCCCTCTCAGCCATCATCGACGGCAAGATTTTCTGTGTGCACGGTGGCCTCTCGCCTTCCATCCAGACTCTAGACCAGATCAGAACCATCGACAGGAAGCAAGAAGTACCGCATGATGGACCAATGTGTGACTTATTGTGGTCTGACCCTGAAGATACTACAGGCTGGGGAGTTAGCCCGAGAGGAGCAGGATATCTGTTCGGCAGTGACGTTGTGGCCCAGTTCAACGCAGCCAATGACATCGACATGATCTGCAGAGCCCACCAGCTTGTAATGGAAGGCTACAAGTGGCACTTTAATGAGACTGTGCTTACTGTGTGGTCTGCTCCTAACTACTGCTACAGGTGTGGTAATGTGGCGGCCATCTTGGAGCTGGATGAGCACCTGCAGAAGGAATTTATCATATTTGAAGCTGCTCCACAGGAAACTCGAGGCATTCCCTCCAAAAAGCCAGTGGCTGACTACTTTCTGTGAGGCTGCCGTgactttaggattttttttctgcaggaaGTGGAGTCCTGTGTCTACTCGTATTTCTATATCTATCCGCCCTTTCCCTGCCCAACTGTCTTAActgtgcttattttttttattctctatcATTACAATCTTTTCTATTTACTTTTTGTCCTTTATGAACATCTACCTTCAgcacattctctttctctttgccaGAAACTCTCTCTATTACCTGGACTTCTTTTGCCATacagacacaccaacacacacacacacacacacacacgtgtgcacTCTTTCACACAGACATGGCATTCTAGTCTCTTGTGCTGCTGTGAAGTTTCCGCTCTCACAAGTATGCCGTTAGCTGTAGGCAACTCTGTTTCTAACTAATGTGAATGGCACTACGGAGAGTTGAGGCAAAGACTCAAAGATTCAGATTTGGGAGTTATATGcattactcattttttttattgtatattcttTCCATTCTATTCTCTTATGTTTTAAACGTGTAGGAACGCGCAAGTGACCATTTCTGCTCTCTGTTCTAGATTATGCATCTTTTTACCCCCAGTCATAGTCTTACAGATTTTGACTTTTGTGAAGGAATTGCTGCAGCAATTTACAAACGTACACTGGAAAGAATCGGAACACAACACACAGAACCAACCTGTTTTTAGACatgctttattttctttctctttttttttttctctgactgTTCTCTCTATAGGTctaaatgttgatttttattattatttgtgacAATAAACTGTACTTTTGTATGAACATAA

Function

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0021952 central nervous system projection neuron axonogenesis biological_process
GO:0016311 dephosphorylation biological_process
GO:0007420 brain development biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50357 lncRNA downstream 165953 17789954 ~ 17795977 (-) False vps25
TU50339 lncRNA downstream 253325 17705734 ~ 17708605 (-) True G37333
TU50307 lncRNA downstream 406008 17553572 ~ 17555922 (-) True G37309
TU50288 lncRNA downstream 467515 17488885 ~ 17494415 (-) True G37298
TU50502 lncRNA upstream 155514 18126534 ~ 18126807 (-) True G37443
TU50503 lncRNA upstream 156234 18127254 ~ 18127560 (-) True G37444
TU50508 lncRNA upstream 166929 18137949 ~ 18139122 (-) True G37449
TU50509 lncRNA upstream 169772 18140792 ~ 18141076 (-) True G37450
TU50510 lncRNA upstream 170987 18142007 ~ 18142377 (-) True G37451
XM_022669239.1 mRNA downstream 1639 17941850 ~ 17960291 (-) False LOC103023166
XM_022669236.1 mRNA downstream 1639 17941850 ~ 17960291 (-) False LOC103023166
XM_022669242.1 mRNA downstream 1640 17941850 ~ 17960290 (-) False LOC103023166
XM_022669241.1 mRNA downstream 1640 17941850 ~ 17960290 (-) False LOC103023166
XM_007248695.3 mRNA downstream 1640 17941850 ~ 17960290 (-) False LOC103023166
XM_022669442.1 mRNA upstream 1568 17972588 ~ 17986489 (-) True LOC103023915
XM_022669245.1 mRNA upstream 21047 17992067 ~ 18015094 (-) True LOC103046263
XM_007248698.3 mRNA upstream 72022 18043042 ~ 18056729 (-) True aldoa
XM_022669248.1 mRNA upstream 129546 18100566 ~ 18117853 (-) False LOC103046869
XM_022669247.1 mRNA upstream 129546 18100566 ~ 18117852 (-) True LOC103046869
XR_002649889.1 other downstream 165944 17789951 ~ 17795986 (-) True vps25
XR_002649888.1 other downstream 256907 17692497 ~ 17705023 (-) False cntd1
XR_002649887.1 other downstream 256907 17692498 ~ 17705023 (-) False cntd1
XR_002649886.1 other downstream 256907 17692498 ~ 17705023 (-) True cntd1
TU50318 other downstream 308145 17584050 ~ 17653785 (-) False LOC103025753
XR_002649891.1 other upstream 311470 18282490 ~ 18317957 (-) False LOC103047479
TU50696 other upstream 601671 18572691 ~ 18573176 (-) True G37603
TU50715 other upstream 662558 18633578 ~ 18635098 (-) True G37616
TU51149 other upstream 1847248 19818268 ~ 19825652 (-) True c4h10orf128
TU51712 other upstream 3902300 21873320 ~ 21878377 (-) True G38338

Expression Profile