RNA id: XM_007248744.2


Basic Information

Item Value
RNA id XM_007248744.2
length 1627
RNA type mRNA
GC content 0.54
exon number 8
gene id tekt3
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 12964782 ~ 12976020 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGGAGGCTCTCTGGGTGCATTTATCCAGGTACTCTAAAGGTGCGTTGTGGTCCAGCCAGGTAGCACCTCTCCACAGCTTCAAAACACCTGAGACCACCAGGAAGGACAGGAAAGTATCGTAACGTTTTTGATTGACACATGGAGCTGATTGGATCCACGCAGACGGCCACGTACACGCGGCCCAAGACCAGCAACTTCCTACCTGCCATTTCCACCACAGCGTCCAGCTACAGGAACTTCCCGCCAGCCTTAACCGCCAACCAGAACGCCAACATGCCCTGGAGGACTAACACCTACTTCAGGAGCGGAAGTGCTATTCCCTCCATCCTGTCCTCCTCCCAGAGAGACAACCTGGAGCTGGTCCGGGCCAAGACCATGTTCTACCCCTCCAACAGGGCGGCGATGAGCACGCGCTACATGCCGGACGACTGGTTCAAATCCAACTACAACAACTACAGGGAGTCCGAGTCGTCCAGGAACAGCGCGGAGAGGCTGCGGAGGGATACGCTCAGACTGATCCAGGACCGAGACCAGATCACCCGCTGGACACAGGAGAGCACCAGCAAGAACCTCGGAGAGAGGCTGAACGACATCACCTTCTGGAGGTCTGAGCTGCACCACGAGATCGATAACATGGTGTCAGAGATAGCAGCGCTAACCGAGGTGAAGAGGAGGCTGGAGAGAGCGCTCGCCGAGACCGAGGGGCCACTGCAGaCGTCGCAAGAATGCCTGTTCCACAGAGAGAAGAGAATGTCCATTGACCTCGTTCATGATGGTGTAGAAAAAGACCTGATCAAGGAAGTGGAGGTGATAAAGTCGTGTCAggagaggatgaggaggagtcTGGACAAGGCTATCGCTCAGCTAGCGTCAAATCGAGCAGCTCAGCATGAACTGGAGAGAGATCTGAATGATAAGGTAACGGCTCAGCGGATCGACGACAGGTGTCACCAGATGAGGAACACTTCAGATGGAATCAGCTACTACAGAGGCATCGATCGCCTCGATCCATCCCTGAGTTTACCCGATTCCTGGTCCAAATTCACGGACGACAACATCCTGCTCTCTCAGAGCGAACGATCCACATCCCACAAACTCCGAGACGAGATCGAGGTTCTCCTCAACACCACCGCGAACGAGATGTGGAACCAGTTCAACTCCGCCAACGTGTCCTTCACCAACCGCATATCTGAAATGGCTGAGGCCAAGAACAGCCTGCAGACTCATTTGGCGAAGACTCTTCAGGAGATCTTCCAGACCGAGATGCTCATTGAAACCTTGAAAAAAGCCATTCGAGATAAGGAGAACCCTCTGAAAGTGGCTCAGACCCGTCTGGAGGAGAGAACCCGCCGACCCAACGTAGAACTCTGTAGAGACAATCCACACCACAGGCTGGTGGGTGAGGTGAGGGAGATCGAGGACTCGATCTATAAGCTGAGGGAGAGGCTGGCGGAGGCTGAGAACACTCTGCAGAACCTGGTGAAGACTAAAGTCACTCTGGAGCATGACATCTCAGTCAAGGCCAACTCCCTGTTCCTGGATCAGGAGAAATGCATGAGCATGAGGAGAAGCTTCCCCAGCACCCCACGTCTGGTGGGCTATACCTAAACCACAGGATccaacattt

Function

GO: NA

KEGG:

id description
K18630 TEKT3; tektin-3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48604 lncRNA upstream 10071 12954411 ~ 12954711 (+) True G36106
TU48487 lncRNA upstream 127462 12835279 ~ 12837320 (+) True G36011
TU48480 lncRNA upstream 170578 12772988 ~ 12794204 (+) True G36004
TU48465 lncRNA upstream 267574 12696949 ~ 12697208 (+) True G35992
TU48425 lncRNA upstream 269166 12694830 ~ 12695616 (+) True G35972
TU48628 lncRNA downstream 240764 13216784 ~ 13278356 (+) True G36129
TU48658 lncRNA downstream 331073 13307093 ~ 13311608 (+) True G36146
TU48666 lncRNA downstream 347154 13323174 ~ 13325570 (+) True G36154
TU48669 lncRNA downstream 349915 13325935 ~ 13336434 (+) True G36155
TU48680 lncRNA downstream 416625 13392645 ~ 13394580 (+) True G36166
XM_022669128.1 mRNA upstream 133463 12717653 ~ 12831319 (+) False LOC103024023
XM_022669124.1 mRNA upstream 133463 12717653 ~ 12831319 (+) False LOC103024023
XM_022669125.1 mRNA upstream 133463 12717653 ~ 12831319 (+) False LOC103024023
XM_022669123.1 mRNA upstream 133464 12717653 ~ 12831318 (+) True LOC103024023
XM_022669126.1 mRNA upstream 143508 12717653 ~ 12821274 (+) False LOC103024023
XM_007248745.3 mRNA downstream 15123 12991143 ~ 13009673 (+) True pmp22
XM_022669132.1 mRNA downstream 321528 13297548 ~ 13305858 (+) True psme2
XM_007260019.3 mRNA downstream 376835 13352855 ~ 13359288 (+) True LOC103038526
XM_022669136.1 mRNA downstream 447017 13423037 ~ 13459971 (+) True heatr1
XM_022669141.1 mRNA downstream 484631 13460651 ~ 13471964 (+) True arg1
TU48468 other upstream 261726 12702305 ~ 12703056 (+) True G35995
TU48402 other upstream 398811 12551780 ~ 12565971 (+) True bnip3
TU48418 other upstream 593820 12366540 ~ 12370962 (+) True G35967
TU48301 other upstream 1162578 11801458 ~ 11802204 (+) True G35903
TU48151 other upstream 1962977 10994361 ~ 11001805 (+) False dock1
TU48945 other downstream 1487117 14463137 ~ 14463639 (+) True G36371
TU49039 other downstream 1813360 14789380 ~ 14790833 (+) True G36439
TU49230 other downstream 2456811 15432831 ~ 15440153 (+) False LOC103028998
TU49796 other downstream 4024362 17000382 ~ 17018884 (+) False sun1
TU49797 other downstream 4024362 17000382 ~ 17018884 (+) False sun1

Expression Profile