RNA id: XR_002649886.1


Basic Information

Item Value
RNA id XR_002649886.1
length 3605
RNA type misc_RNA
GC content 0.43
exon number 9
gene id cntd1
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17692497 ~ 17705023 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAAAAGCAATGCCATGGACGGTACACTTACCGAATCAGCAGTTAGTgacttaaacattaaataacgtgtgaatttgggacacagcctgaGGTTGTGAGGTTGTTAGTTCTGGCTGCGCAGGCGCAGTGGGTGGACGGTCAGTGGTAAGGTGCGGATGTAAACGGCGATGCCGCCATCTAGTGTTTAATTTCGGCAAAACACGCCGCAGATTTGAGGTAATTTCTGTTAATCTGTTTAAACCACTTTTCTGAGCCAAAAACTATGGCAAAAAGACCCAGAGCGTTTTCATCCAGCGGTCAGGAGAGCCCGAGGTTCGGCGAGGCCTCGCCGGAGGTTCTGTCAGACTTTCTGTCCGACCTGAACAACTCCAACAAATCCCGCCTGCAGAACATCTCCAGCCTCTGCGGGAACTTTAAACAGGGGAAGGTAGTGGAACACGCATTTCTCATCTGTGAGGAGCTGGGACTGGACGCTTCTGTTGGTTATCACGCTGTTGAAATACTGGACAGGTTTATGGTGCAGCATATTGAGAATTTTATTATTAGCCAGAGAAGTGAAGCTGGTGAAGGCCCCTCCTGCAGAGCCAAAAAACACAATGAAGATCTGATCTATCAGAGTCTCAGTGGGAAATTCCAGATCTTTCTCCTATCAAGCGTGCAGATAGCCAGCAAACTGGCCTTACATTCCAGTGCCGTTCACAACGACTGTGCTTCGAGATACCTGCAGTCACTGGGCAGCAGCTGTCCCGAAGAAAAGCTTCTGGAGACAGAACTTCTCATCCTGAAAACTCTGGACTTCCAGCTGAACATGCCGAACCCTCTGCTGTATGTAGAGACTCTTCTGGAAGTTCTGGCCCACAATGTGCCAACTATGCCTGTTGCACAGCTGCATCACCTGTGCAGGTATGTGCTTCAGTTTATCTACCTGAAGAGAGGACCAGTCTATCAGTCCCTTCTTGTGGCTGCTACAGGATGTCTCAACCCTTCTCCAGAACAAAGGGAAAAGTTTGTGTCAGTGACTGAGGACTGCATGCTGTTGGGGGTTGGAGTGATCACTGTATCTGCATACATCTACCAGACGTCTGTTTGGGAGAAGGTGGTGGAGGAGCTCACTCTGATCACTGGCATCTCAGCAAGGAGCATCATAGACTTTGCTCATGTTACTCTGATGCACATCACCAAGAACAGAGCGCCATAACTGCTGGctgaaagagtttgctGTCTGTAATCATATGGATGCTCTCTTATTCTGACGTCACAACAAGCAAACCTGCATTGAACCacccctggcaccacccctcacccatcaaccctcaccagagccccacccactagatcagttgatgaAACACCATTTTGATCATTTTGTTTGAGACCCTCACACAGAGCattacacagcaggattagccagcagacttcgtctgagtgaggggatctgtatctactattCGTGGCAAGTCAGAAGATAAAGGAGATGTAAggaCGTAAATAAAAGTGGAATCGACGTTCCAGCCTCCCACTGAGAAACAGCGATGTGCTCAGATATTGCAGTTTGTTCCATGGCAACAATAGCAGGAGGACAGCTCCGGTGGTTTGCAGCTCTCAGTGATGTCCTGCTCTGATATGGACCGTCTTCAGTTATCATATGGACGCTCTGCGgcctggaggaggaggacaaTGTACAGTAAATGACTTGGGCTGGAGTAAAGGCATAGTCACAACCTACCCGAGTGGCCAGATGTTTAGTCTGTGAACGAGGTTTCATGAGCTACTCACTCTTAATTGATCTCTACATGCTCCGCCCATAAATTTGTTCTTATATAGGTTTTAGTTTATATTGCTGCTGATTTATAGAAGGTTTATAGAATGGTGGTAAAAATCCCATTTAATCAGGGCGGgctgtttttaatgtataaatggGACTAAGCTCAtcctttctcttttatttgacttttttaaagttaataaatggctggattattttattattttgaactTCTGTGGACCCAAGAACAGTAGTGCCACCAAtaggatgtttaaaaaaaataaaaaaagcataaattgGCTGAAACAACTGATCTGCAGTTTCGTTTCAGTTAAAacacaattattttaaattacaaatgaatattttttaaagtattacatcaacattatttgttatttttgttgagTGGATTAATATTTAGGTGTAGTGTTTAAAGCAACGAGTGACAATGACAAAGACTTCATTCTCTTTATTAAAGTCAGCATGATTCACAATGGCAGTGTTATAAAAGAGAATCACACTCCGCAACTGTAGAGGGAGCCTAGGAGCGAAACAAACCAATCCTCACATAAAGCTGCTTTAATGCAATATTCAGTTCTTttatttctgcacaaaaaaactgtgtttattcattCTCAGAACTGCTACAAAGCAGGCACTTTTTGGATATCTCTAGTCTTAAGGACATGCATTTTACATGCATTTGTTAAAAAGCTGAGAGATACTGAAGCTGCATCTGAAGAATCAGAAAGAATCATGTGGACAGAGGTGGTAAAGTGATAtaacaggattttacacaaatatgacttgTGTAACTACAGTGAGAGTTCTCATGATGCACCACCAAAGTTAAATAGTGCAGTAGATGTATTACAGGCCAGACTGGCAATAACCGTGACTTCATCATCCTTATTACAGTCAGTGAACCAGTGTATCAATTCTcacttaatgctgctttaatgcaATTCTCagtttattgtgttattgtgtttatttcatttttcagaatTGCTACAGTGCTAATTGCCAGCAGGCACTTTTTGTATGACTCAATACAGCATAACTATCTACAGCAGAGCGGCGTCTGCCAAGGATAGAAAGGCCACTGATCCCAAGGAACCTTGTCTGACCTCCGGGACGAGCGAGTTTACTTTGACTGGATTAAGAAGAGGATTTGAGGACCAACAGCTCCCCGCTGGTTTGTCTTGGCTCGGCTCACTACGATTTTGTTCAGCAGGGTTTGAGTGTAACCTCAGCTGTCCCAAACACACGGTAACTGCTAATATACACCTCATCTTCTCAGGGCCTTCTGTCCAGTGCAGGCCATTGAGAATAAGCTATTTATATCAAACCTTCGGCCTTGACTCTTTAGAGCACTTAGAATCACCTGCCttgctggttttagatgtttcAATGGTGCTATAACCATATTTTTCCATCATGCTATTCTCTTTCCCCCTCTTGCTTTGTTCCCTCACACCGGGCTGGATTTATCTTCCTCATTCAGACGTTGCAGTGTTTTATCCGTTGTGGATGTAAACGTGTTTCTGGCAGGACATGAAAGAATTTCTGCTTGTGGATAAATGATGACCTGATGATAGAGTGCACAGGAAGGGtgggtattattattttacccaGTGCACGCCTTAATTATGACTCTGGGTTTGACTACTGTAAATATGCCATTACTCGGACCAAATGGCTGTGTTTGAAATAGTGCCTGCGCTGCTTGTGTGCATATTGTGCCCAAAAGTACTGTAATAAGCGCCAAAGGTAACAGAATGACATACTGGCCAAATATTCCAGTTTGCAGCCAGGGCTGTCTTCTTTGTGATTAA

Function

GO:

id name namespace
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50307 lncRNA downstream 136576 17553572 ~ 17555922 (-) True G37309
TU50288 lncRNA downstream 198083 17488885 ~ 17494415 (-) True G37298
TU50290 lncRNA downstream 198083 17488885 ~ 17494415 (-) False G37298
TU50286 lncRNA downstream 215662 17473910 ~ 17476836 (-) True LOC103025140
TU50244 lncRNA downstream 302077 17385841 ~ 17390421 (-) True G37274
TU50339 lncRNA upstream 711 17705734 ~ 17708605 (-) True G37333
TU50357 lncRNA upstream 84931 17789954 ~ 17795977 (-) False vps25
TU50502 lncRNA upstream 421511 18126534 ~ 18126807 (-) True G37443
TU50503 lncRNA upstream 422231 18127254 ~ 18127560 (-) True G37444
TU50508 lncRNA upstream 432926 18137949 ~ 18139122 (-) True G37449
XM_022669440.1 mRNA downstream 3114 17534703 ~ 17689384 (-) True LOC103025753
XM_007239748.3 mRNA downstream 174788 17509960 ~ 17517710 (-) True lsm12
XM_015603206.2 mRNA downstream 187681 17500469 ~ 17504817 (-) True LOC103024821
XM_007239750.2 mRNA downstream 215620 17474584 ~ 17476878 (-) False LOC103025140
XM_022669227.1 mRNA downstream 226740 17442641 ~ 17465758 (-) True LOC111192380
XM_022669441.1 mRNA upstream 5977 17711000 ~ 17784278 (-) True wnk4
XM_007248682.3 mRNA upstream 85370 17790393 ~ 17795988 (-) False vps25
XM_007248686.3 mRNA upstream 98711 17803734 ~ 17820280 (-) False LOC103047174
XM_007248685.3 mRNA upstream 98711 17803734 ~ 17820280 (-) True LOC103047174
XM_007248687.3 mRNA upstream 117735 17822758 ~ 17836906 (-) True maz
TU50318 other downstream 38713 17584050 ~ 17653785 (-) False LOC103025753
TU50265 other downstream 226474 17432972 ~ 17466024 (-) True G37290
TU50267 other downstream 229181 17432972 ~ 17463317 (-) False G37290
TU50205 other downstream 310901 17374184 ~ 17381597 (-) True LOC103024241
TU50180 other downstream 508093 17179378 ~ 17184405 (-) False LOC103030148
XR_002649889.1 other upstream 84928 17789951 ~ 17795986 (-) True vps25
XR_002649891.1 other upstream 577467 18282490 ~ 18317957 (-) False LOC103047479
TU50696 other upstream 867668 18572691 ~ 18573176 (-) True G37603
TU50715 other upstream 928555 18633578 ~ 18635098 (-) True G37616
TU51149 other upstream 2113245 19818268 ~ 19825652 (-) True c4h10orf128

Expression Profile