RNA id: XM_022668845.1


Basic Information

Item Value
RNA id XM_022668845.1
length 2597
RNA type mRNA
GC content 0.42
exon number 2
gene id ppp1r3c
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 287990 ~ 299000 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctctctctctctctgtgtacgTGCACAAAACTCTGAGAGACACTAATGAACCATCATCAGCAGAGTGGATGTAGAGGCTTCCTAAAAGagttttgcacatcttgaacCCCAGACCGATGCCATCTCCAATCATGCCTGTGGATGTGGCCATGAGGATCTGCCTGGCACACTCCCCACCCCTCCGCAGCTTCCTTGGTTCATACGAGGACTGCAAGTCCAGGAACCTGGTCAACCAGTACAAACCACTACGGCCATGCATCAGCTCCAAACCCAAGGTGGAGGCCACAAACCGAGGATGGAAGAGTCCAAAGGGGAAAGCCAAGAAGAAGGTGGTATTCGCCGACTCCAAGGGCATGTCCCTTACGGCCATCCACGTCTTTAAGGAGTTTGAAGAAGACGCCATGTCTGACTTGCAGTTCGAGCTGGCAGACTTGGAGAACGCCATCGGGGGTATGAAGGTGGAGAAGGAGAAGAGTTTTGTTTTAGACTTCCCCCAGCCTGCTGCAGACTACCTGGACTTCCGAAACCGTCTCATAAAGAACTCTGTGTGTCTGGAGAACTGTGTGATCCAAGACCGTACTCTCACAGGCACAGTGAAAGTCAGCAATGTGAGTTTTGAGAAGGCCGTTGATGTGCGGATAACGTTCGACTCGTGGAAAAGTTACACGGACGTTCCTTGTGCCTACATGAACAATGTTTATGGTTGCACAGACATTGACACCTTCTCCTTCACCATCGACCTTCCGAGTTTGGTGCCCCCTGAAAAGCATGTGGATTTTTGCATATCCTACAAAACCCACGACCAGACGTACTGGGATAATAATGATGGGAAGAATTACAGGTTGATTAATGAGGACAGCGATGGCGACCATAATGGCCATGCTGCTCCAGCGCCATCCGAAATCAAGAGCCCTGGCACGCGACCGGAGACGGAGTTTGATCAGTTTGGGAGCCCAAGGACATCCAGTGGCTTTTTTCCAGAGTGGCAAAGCTGGGGTCACATTGAGAACACCACTCCCTATTGGTGAGGCCATTAGGGTGCCCCATGCAGTTCCATTGAAGCCACAGGAAGTTCTATGGGTAAAACCATAAAAAGggtaaatgctaaataaaaattGGGTCCCTGGGTCCCTCTCAGAGTTGTCGGTTATATAGCAATAATAGTCTAGAAATTGAAggttaaaaaacattgaaaaacatTGTTTTGTCACTCAAATTGAACCCTCAGCCCTTCAAAATATTTGTACACCCATTGGCTGTATTGCTGATCTGATTCATTTGCATATTTCAAAattgtttatcttttttaggttatgttaaaaaaatgaataaataaataaggattTTAACACCCATTGTGAGAAGTTACATAGCCAGGTGCTCAACTAAACATAAATGGTTTAATGGTATAATTGCTCCTAACTATGCTGTGCACTAAAGCACTTAGATTTGAAACTGTAACTGTTATAACGTAGATTGCCTTCCTTCGTGATTCTCTGATTGTTAGTCAGATTGTTTGTGATTAAATGGCATTAGCTGTTCGAAAGAgaataaattactaaaataaataaacaaataacaccaTCTGTTGCAAGGGCAAATTTCTTCTCTTAAAATGAGACTTTTGTGCAATTgattccttctttttttcttctctgttttCATGCTTATTTTTGTTAACTTGAAAATCAGTGTAGCAACATTGCCCGGATTAGTCGAGTTTCACCCTATGGCTACTCTCAGAACACTGTGCATTAATATAAGGGGATGTTCATCTCCTGCTTGTGGAATGTGATTGTGAATGCTCACTTGGAGGGGGTACTTTGCACTGTGTAAGATGCCTTTAAAGCGAAGAATGTGAAAGTGGGAAATGATTTGGTATGACAGGAAGTTGCTTCATATTGAAGTTGAGATATTTTGTGGTACCAATTGATGACCCACTTTCCAGCAGAAGCAATATTTGAAACTGATGCATTATCATAAACCCATATGAGATACTGCTGGCCATTACCTgtcatttctgtttttatgcaCATTTTTCCTACAtcttttcagttttgttttgtaaagcTACTTTGTACATACACTGTCCTGTTTATTTGCTGCCTCTCCTCCATGTTTgctgctgtgttttattttgtcagtgtttcgCTCCACTGTTGCATAGGCCTAGGCCCATGGCATGTGAAAACCCCTACTGGCACTTAGGATGAAATGAGGGATGTTGAATGTTATTTAATGAGAGTGATTGTAAGTTAAGTTTAGCCATACAGAAGTCTGCAGAGCGGTGTGTTGAATGAGCTTTTGTTCTTGCCTTTCTCATGCTTGTTTGCTGCACTGTCGTCCAatagaaaaagaggaaaaaaactgTTGGATGTAAATTATGTGATTTGGAAATGGTTGGACTACTGCTAGCTGCTTTTTATGTCAGAGATGGAATATGTATGTTGAATGTATAAAAAGGCTGTTTAAACTACAGTTCACACCTGATATGTTgggtttttgtatgtttgttttaaagcCTGGAAGGTTGTCTGTCTGAAGGTTATCTATGGTTTTCTGTGTTCCTTTAGAAATAAAACCTAATGTTTCTACAA

Function

GO:

id name namespace
GO:0005977 glycogen metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44749 lncRNA downstream 11310 275050 ~ 276680 (-) False G33277
TU44750 lncRNA downstream 11310 275050 ~ 276680 (-) True G33277
TU44747 lncRNA downstream 12580 275050 ~ 275410 (-) False G33277
TU44742 lncRNA downstream 17599 240157 ~ 270391 (-) True G33272
TU44739 lncRNA downstream 56127 226997 ~ 231863 (-) True G33270
TU44761 lncRNA upstream 55200 354200 ~ 354841 (-) True G33286
TU44772 lncRNA upstream 70727 369727 ~ 372765 (-) False G33289
TU44774 lncRNA upstream 70727 369727 ~ 372765 (-) True G33289
TU44776 lncRNA upstream 71373 370373 ~ 373316 (-) False G33290
TU44777 lncRNA upstream 71373 370373 ~ 374146 (-) True G33290
XM_007251310.3 mRNA downstream 178250 101240 ~ 109740 (-) True LOC103039609
XM_022668843.1 mRNA downstream 191820 72134 ~ 96170 (-) False LOC103039921
XM_022668842.1 mRNA downstream 191820 72134 ~ 96170 (-) True LOC103039921
XM_007251147.3 mRNA downstream 250512 21446 ~ 37478 (-) True pank1
XM_022668841.1 mRNA downstream 268170 1476 ~ 19820 (-) False slc16a12
XM_022668849.1 mRNA upstream 7356 306356 ~ 337153 (-) False LOC103038678
XM_022668848.1 mRNA upstream 7356 306356 ~ 337153 (-) False LOC103038678
XM_022668846.1 mRNA upstream 7356 306356 ~ 337153 (-) True LOC103038678
XM_022668847.1 mRNA upstream 8345 307345 ~ 337153 (-) False LOC103038678
XM_022668851.1 mRNA upstream 56650 355650 ~ 365154 (-) False LOC103038367
TU44781 other upstream 90469 389469 ~ 401312 (-) True LOC111192416
TU44782 other upstream 90469 389469 ~ 401312 (-) False LOC111192416
TU44793 other upstream 90469 389469 ~ 401312 (-) False LOC111192416
trnaq-cug other upstream 826465 1125465 ~ 1125536 (-) True trnaq-cug
trnar-ccu other upstream 827395 1126395 ~ 1126467 (-) True trnar-ccu

Expression Profile