RNA id: XM_007251249.3


Basic Information

Item Value
RNA id XM_007251249.3
length 1855
RNA type mRNA
GC content 0.42
exon number 4
gene id tomm22
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17385894 ~ 17390425 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGAGGACCTGCTTTACTCCGCGCACATGTAACCGAGTTGACCTCCGGCTGGAGCTCCGCAGTTCAGATTCATCGCCTGCCAACAGCTCTAAAACACACAGGCGACCGCATCGCCCCGTAGCTGCGCTGTGTGAACTGTCGCTGCGCTGGTCTTAGCGCGGGTTAGTGGGAGTGTGtgagatcagtgtgtgtgagctgtgtgtgcGGGGATGCAGGCGCTGTCTCCAGACGCGGGGCCTGTGGACACACGGCCTCATGAGGAAGACATCGAAGGAGACGATGAAGACGAAGAGCTGGATGAGACCATGCTGGAGAGGCTGTGGGGACTGACTGAGATGTTTCCAGACACCCTGCGGTCAGCAGCTGAAGTATCTGCACAGTGCTCACTGTCTGTAGCCAAGAAACTTTACAGTTTTTCCCGCAGTGCACTGTGGGTGGGCACCACTTCCTTTATGATTCTGGTTCTTCCAGTTGTGTTTGAAACAGAGCGACTACAGCTTGAACAACAACAGCTACAACAACAGAGACAGATTCTGTTGGGCCCAAATGCTGGCATGTCTGGAGGAATGTCCGGAATGATGCCCCCTGCTCCTGGAAAGCTCTGAAGAAAAATGTCCAGCACTGTCTTTACGCTGCAGTTCACAGGGGACCTggaaaagaaacacagagagagggcGAACTGGGGGGGAGAGAACGAGGAGGTGGATGTCGGTCAACACACTGCAGGACTTAATTGGTTGAACATGGGAGGAAATGTGTCCTTTCTGAAGAGCAGcaaaatgtgtttctttctatatctctctcactctgtgtcCAGCCTACACTTCTGAGCACTGACAGTTTgagttcctttttttattttatagctgTGTCATTACATCTCTCATATTTCTTTCTGAAAGTAAAATGGGTATTTCTCATTCTTTAGTAAAAGCAAGTTTGTCTGCAGTAAGATGTTCATGTTAACATGTTTAAATGGGTGTTGCATTATAAATGTTCGTTATGAACATTTTCTTAATGGATTACAAAGACCAGCTCTGAAAGACTCAAACATTCACATGTTTAGTTGTTGCGATTGTCCTGCTTGTAAGTGTTAAAGCTTGGTAaaattactgtttaccaacagtCTCCTTTACAAATATGTTTTGTAAAGGGGAATTCCACACATTCTTTTACGTAATCTAAGCATACTTTCATTAGTGACATATTAACACTTACTAATGACACATACTGGTTTTATATAAACTGCTCCACTTGTAAGACAGAAATTGGAGTCAGCTACAGCACCAAGATATTGCAAGAAAGGGTTACAAATACATAGTTCTTTCCTGCTGGAGACCTTGAGATCCATACTTTCAATGCTTAACGGTCATATCAAACCACCAAGTTGTTATTTTAGGGATTGAATTATGCAGACATTTAGTAAAAATGTTGGAATTCCCCTTTGTCATCATCTAAAGGAAACACCATACATGCAATACAATGAGTAATGGATCACATTAAAGTTCACATGGATCAGGTTTAGCAACTGCACAACATTTATGGCTTGTAACTGTTTTTCATGGAAAGAGGAACAAAAGAGTTGTCACAAGCATGATGTTAGTGTCAGACTTACTGACCTAGTGGAAACACGGACTTATAAACACTTGTTAAGTAAACTTAAGTGTTTGCATGTGCTTGTAATGCTAAACCTGTACATTGTTTAAGCTTTGTAAGGACACTGCATTTGAGTTTTATGCATTTGTATAAATTCTTTAACATCAAAACTATATAATGGCAATTTTTCATGTCAATCTCTCCCAAGAAGGTCTTTGTATATTCAACATGTCTAAAGGaataaaggaaaacaaacaTG

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0001889 liver development biological_process
GO:0005741 mitochondrial outer membrane cellular_component

KEGG:

id description
K17769 TOM22; mitochondrial import receptor subunit TOM22

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49896 lncRNA upstream 45013 17297479 ~ 17340881 (+) False tnrc6b
TU49887 lncRNA upstream 109873 17273361 ~ 17276021 (+) False LOC103027613
TU49868 lncRNA upstream 161487 17224041 ~ 17224407 (+) True G37001
TU49867 lncRNA upstream 162194 17223335 ~ 17223700 (+) True G37000
TU49865 lncRNA upstream 163019 17222400 ~ 17222875 (+) True G36998
TU49957 lncRNA downstream 77532 17467957 ~ 17468321 (+) True G37055
TU49958 lncRNA downstream 78055 17468480 ~ 17468772 (+) True G37056
TU49960 lncRNA downstream 79899 17470324 ~ 17470774 (+) True G37058
TU49962 lncRNA downstream 84993 17475418 ~ 17475771 (+) True G37060
TU49968 lncRNA downstream 118992 17509417 ~ 17509619 (+) True G37066
XM_007251250.3 mRNA upstream 11772 17358723 ~ 17374122 (+) True tmem184b
XM_007251251.3 mRNA upstream 11772 17358723 ~ 17374122 (+) False tmem184b
XM_007251255.3 mRNA upstream 27301 17343937 ~ 17358593 (+) True LOC103024972
XM_022669219.1 mRNA upstream 45002 17326576 ~ 17340892 (+) False tnrc6b
XM_007251248.3 mRNA downstream 1305 17391730 ~ 17396057 (+) True dmc1
XM_022669226.1 mRNA downstream 1581 17392006 ~ 17396057 (+) False dmc1
XM_022669225.1 mRNA downstream 6728 17397153 ~ 17409934 (+) True LOC103022777
XM_022669438.1 mRNA downstream 33260 17423685 ~ 17424194 (+) True LOC111188179
XM_015603207.2 mRNA downstream 93494 17483919 ~ 17491064 (+) False tmem101
TU49885 other upstream 103663 17279661 ~ 17282231 (+) False LOC103027613
TU49869 other upstream 151344 17232879 ~ 17234550 (+) False cby1
TU49795 other upstream 180861 17201497 ~ 17205033 (+) True phf5a
TU49797 other upstream 367010 17000382 ~ 17018884 (+) False sun1
TU49999 other downstream 315281 17705706 ~ 17708597 (+) False LOC103045739
TU50007 other downstream 324704 17715129 ~ 17715992 (+) True G37098
TU50008 other downstream 327806 17718231 ~ 17719376 (+) True G37099
TU50046 other downstream 467492 17857917 ~ 17863066 (+) True G37131
TU50069 other downstream 562155 17952580 ~ 17960304 (+) True G37152

Expression Profile