RNA id: XM_007251259.3


Basic Information

Item Value
RNA id XM_007251259.3
length 1463
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC103025298
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17319206 ~ 17325915 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTAATTTATACCCACACTACAAACCAATGAGTCGCGGCTTTAAACCGTAATGTCAAGTAAGGCATTGGGGGCACCTACAGACCCCGATCATTTGAGGGGGGACACACAAAAACACCGGATTCCCTGAGCGCATCATTTAAACTGTAGTCCTCACTCGGGCGGCGTTAGTAACGCAAACTGAACTTTGGTATAAGTATGGGTCCACgaaagagaggagaaaggaagagaaaagcaGAAGAAAATTCTGCTCAAGATGAAGAGGTTGCAGATACAAGTGGAGCAGGAAAATCATCTGAACGCAGTGCAGGTAAAGTGGTGAGCGGAAAGAAGAGCCGGACTAAAGGAGGAAAGAAATACATTGGTGCTCATGTCTCTATATCAGGAGGCATATGGAAAGCAGTGGAAGACAGTGTGGAGCTGGGGGGACGCAGCTTTGCCTTATTTCTGGGCTCCCAGCGCACCTGGCAAAGGCCGGCCCTCGATCAATCTGCTGCAGTAAAATTCCAGAAGGCTTGTGCTCAGCATGGATTTGACCCGACACATATCCTTCCTCATGGATCTTACCTGATGAACTGCGGCTCACCCAAGCAAGATGTGTTTACTAAGAGCCAGGCCATGCTGGTCGATGAACTAAGTCGCTGCAGTGCTTTGGGCCTCACTCAGTTTAATTTCCACCCTGGGGCCTCCATTgactccagcacagagaagtgCATCGAGAGGATTGCCCAAGCTATAAACCACGCTCACAATCAAACATCTGCTGTCATCACTGTGCTTGAAAATATGAGTGGACAGGGGAGTACTGTAGGCGGACAGTTTAATGAGCTGAAGAGAATAATTGATCGCGTTCGAGACAAGACACGTGTTGGAGTGTGTCTGGACACATGTCATGCATTTGCCGCAGGTTATGACATTTCAAAGGCTGGAGGAGTGAAATCTATGCTTGATCAGTTTGATCAGGAGGTTGGGTTGCATTACCTGAGAGCATTTCATCTCAATGACTCAAAAGgtatATTGGGCTGTCACTTGGACCGCCATGAGGACATAGGGTGTGGGAATATTGGGATCTCAGCTTTCCGAGACATTGTGAATGAGCCTCGCCTGGACAACATCCCTCTCATACTTGAGACTCCCGGACGCCCAGGTTTTGAGTACGCTGAACAAATAAAGCTTCTATATTCTCTTTGTGAGGACTAGAAGACCCTGAGGACTCTTCGCAAGGCAAAGATAAAGACAAGGCAAAAGCCTTAATCCTTCTTTTTGTTCAATTCTGTTCATAACCAGCAATCTTTTGATCTTATATTTTGTTCCTGTTACAACAAATTACATTGTTgaatttaaataattcagataTGTTCAGTGTGGCACTGTATGAATTGTATTGTTTATCAGCAGAGGGAGCCGTTACCCAACCAAAATCCTTGTGTGAGTTTGACTGAGTAAAACAGAACACGTCCACTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50196 lncRNA downstream 71753 17241720 ~ 17247453 (-) True G37238
TU50160 lncRNA downstream 197005 17121775 ~ 17122201 (-) True G37217
TU50158 lncRNA downstream 203198 17112502 ~ 17116008 (-) True G37215
TU50155 lncRNA downstream 208497 17108712 ~ 17110709 (-) True G37213
TU50140 lncRNA downstream 227155 17091742 ~ 17092051 (-) True G37206
TU50220 lncRNA upstream 9676 17335591 ~ 17337322 (-) True G37254
TU50244 lncRNA upstream 59926 17385841 ~ 17390421 (-) True G37274
TU50286 lncRNA upstream 147995 17473910 ~ 17476836 (-) True LOC103025140
TU50288 lncRNA upstream 162970 17488885 ~ 17494415 (-) True G37298
TU50290 lncRNA upstream 162970 17488885 ~ 17494415 (-) False G37298
XM_007251265.3 mRNA downstream 30374 17273373 ~ 17288832 (-) True LOC103027309
XM_022669437.1 mRNA downstream 87067 17213596 ~ 17232139 (-) True LOC103028243
XM_007251272.3 mRNA downstream 106423 17204332 ~ 17212783 (-) False LOC103028774
XM_007251270.3 mRNA downstream 108599 17204332 ~ 17210607 (-) True LOC103028774
XM_007251274.3 mRNA downstream 120369 17187667 ~ 17198837 (-) True LOC103029821
XM_007251252.3 mRNA upstream 48828 17374743 ~ 17381733 (-) False LOC103024241
XM_022669224.1 mRNA upstream 48828 17374743 ~ 17381415 (-) False LOC103024241
XM_015606342.2 mRNA upstream 89160 17415075 ~ 17421795 (-) True rsl1d1
XM_022669439.1 mRNA upstream 105091 17431006 ~ 17438492 (-) True LOC111192420
XM_022669228.1 mRNA upstream 116726 17442641 ~ 17466671 (-) False LOC111192380
TU50180 other downstream 134801 17179378 ~ 17184405 (-) False LOC103030148
trnal-uag_1 other downstream 223880 17095245 ~ 17095326 (-) True trnal-uag_1
TU50113 other downstream 300288 17016128 ~ 17018918 (-) True G37183
TU49443 other downstream 1478721 15837105 ~ 15840485 (-) False LOC103023526
XR_002649883.1 other downstream 1560343 15758390 ~ 15758863 (-) True LOC111192378
TU50205 other upstream 48269 17374184 ~ 17381597 (-) True LOC103024241
TU50265 other upstream 107057 17432972 ~ 17466024 (-) True G37290
TU50267 other upstream 107057 17432972 ~ 17463317 (-) False G37290
TU50318 other upstream 258135 17584050 ~ 17653785 (-) False LOC103025753
XR_002649888.1 other upstream 366582 17692497 ~ 17705023 (-) False cntd1

Expression Profile