RNA id: XM_007251267.3


Basic Information

Item Value
RNA id XM_007251267.3
length 1749
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC103027934
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17241694 ~ 17247513 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCTGCTTTGTTCAACGTGACTCACTCAGGAAGCGGCAACGTTGTTCTTCGAGCACATCCAGCAGTCGAGGGCCTTGAGaacaaaactcatcattttaatataaaataaataaaacactcacAAGAGCTAGATTTAGTTCGCAGGTTTCTCTCTCGCGGTTCCGGACTACGTTAACAATGCCCAGAGGAGGAAAAAAAGGCTACAAAGGTCGTGGCAAACAGTTCAGCAATCCTGAAGAAATTGACCGACAGATGCGAGCACAGAGGGAAAAAgaGGCAAATGGTGGTGTAGAACGTGAAAGTGCTTCAGACTCTGAGGAGGAAAGCAGCAGTGAAGATGAGCAAGACCAAAAGAAGAGTGGAGTGGCAGGATTGATTGAAATCGAGAATCCAAATCGTATCTCccagaaaagcaaaaaagttACAGAAATAGACGACAATGCGCCAAAAGAGCTCTCGCGCAGAGAAAGAGAGGAGATTGAGAAACAGAAAGCAAAGGAGCGCTACATGAAGCTGCATCTAGAGGGGAAGACTGAGCAGGCCAGGGCAGATTTGGCTAGACTTGCTATTATTAAGAAACAAAGAGAAGATGCAgccaaaaaaagagaagaaatgagGAAAGaaAAAGAGGCACAGGAGGCCAAGTCTAAACGTTAGCCTCCTTCCCACCCCTCAGGACAGGGCTTCACTGGGGTGGGAGGGAAGGGACCAAATTAATTAGGGATTCAGCTCAGGGGTGTCCAGGCACACCGTCTTTTCATCCTCCACTGGAGCGGGACAGGACGGCGATTTGGACATTTTAAAGAGTCGGCTAGAAGTGGGGGTTAAAGGCAGGAGCTAAAACTCCTTAAAATAGAGGTTGGTATGGAGCACCGTAATGCCCTTTTTGCCCCCACACCTCCACTGTGCTCTGATCCTAAAGCTGCTGGAGTTTACTCTTACAAATTAGCTcttttgatatattttaatgtacctCTGATTGGGATACTGTTGAAGGTTTGGGCGGGTTGTGCCCTTAATGATGTCTCCTGACCTGTACTAAAGGAGTGGGGTAAAGTAGAGAATGGAGAAACACTAGCAAACCTGTAGCACCTGTAGAACACCATCTGCTCCTGTTCTGGCCTGTGCCCACTTCTGTGGCATCATGTTTCTTAATTTTCAAATGCATAAGCTACCTAGAGAAAGATTCACCTGCTCTGAATGAGCATATTTTTCGCGTGCATGTCAGTTTTTTGATGTATCAAATGTCATTTTGCTGATTCACAGAAGATTATGTGTTATTCCATTAATAAGTAAAAAGTTGATTTGCCTATGAACAGGGCATCAGCAGTATTAATCCACCATCTTTTGTAATGTTcacaatatatagatattttaagcAGAAAAGGTTTACTTCTTGTTTTATCCACTTGGTGTTCATGCTTTcctctaaaaaaataatcttttttttttgcctttaattGTCCATGACCCACTCGAGAGATATCTCTTGTGTGAATATTGTATGCTTCAGTCTTTTTGTGGGACCTGAATTGCCTTGAACAGTAAGGAAAGCAATACTACACTGATGCAGGTGATGCAACATTTAGCTCAGCtcaaaaatgtatacattttgaaaagtgaaCATTTGTAAAGTGCTCTCCAGGACTAAGAAAGTATTTACATTATGAGGTATTGATAGGAAGAATATTATTCACTTGTATCCTATCTTGATTTGTTGTATAGAAATAAATTCATTAGTACATTAAA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0015711 organic anion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015355 secondary active monocarboxylate transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49868 lncRNA upstream 17287 17224041 ~ 17224407 (+) True G37001
TU49867 lncRNA upstream 17994 17223335 ~ 17223700 (+) True G37000
TU49865 lncRNA upstream 18819 17222400 ~ 17222875 (+) True G36998
TU49840 lncRNA upstream 69069 17172425 ~ 17172625 (+) True G36983
TU49839 lncRNA upstream 71838 17169351 ~ 17169856 (+) True G36982
TU49887 lncRNA downstream 25848 17273361 ~ 17276021 (+) False LOC103027613
TU49896 lncRNA downstream 49966 17297479 ~ 17340881 (+) False tnrc6b
TU49957 lncRNA downstream 220444 17467957 ~ 17468321 (+) True G37055
TU49958 lncRNA downstream 220967 17468480 ~ 17468772 (+) True G37056
TU49960 lncRNA downstream 222811 17470324 ~ 17470774 (+) True G37058
XM_015606314.2 mRNA upstream 1062 17237424 ~ 17240632 (+) True slc16a8
XM_015606315.2 mRNA upstream 7135 17232820 ~ 17234559 (+) True cby1
XM_007251273.3 mRNA upstream 37431 17201498 ~ 17204263 (+) False phf5a
XM_007251278.3 mRNA upstream 92346 17132606 ~ 17149348 (+) False LOC103030465
XM_007251266.3 mRNA downstream 3468 17250981 ~ 17273867 (+) True LOC103027613
XM_022669217.1 mRNA downstream 79063 17326576 ~ 17340892 (+) False tnrc6b
XM_022669219.1 mRNA downstream 79063 17326576 ~ 17340892 (+) False tnrc6b
XM_022669215.1 mRNA downstream 79064 17326577 ~ 17340892 (+) True tnrc6b
XM_022669216.1 mRNA downstream 79064 17326577 ~ 17340892 (+) False tnrc6b
TU49869 other upstream 7144 17232879 ~ 17234550 (+) False cby1
TU49795 other upstream 36661 17201497 ~ 17205033 (+) True phf5a
TU49796 other upstream 222810 17000382 ~ 17018884 (+) False sun1
TU49885 other downstream 32148 17279661 ~ 17282231 (+) False LOC103027613
TU49999 other downstream 458193 17705706 ~ 17708597 (+) False LOC103045739
TU50007 other downstream 467616 17715129 ~ 17715992 (+) True G37098
TU50008 other downstream 470718 17718231 ~ 17719376 (+) True G37099
TU50046 other downstream 610404 17857917 ~ 17863066 (+) True G37131

Expression Profile