RNA id: XM_007251272.3


Basic Information

Item Value
RNA id XM_007251272.3
length 3788
RNA type mRNA
GC content 0.38
exon number 5
gene id LOC103028774
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17204332 ~ 17212783 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGTCTGGTTAAGTAAGCCTAAACCTTGTGACACTCTGAAAGTTTCATATCTGACCTTGCCTCTCAACCTtgcctgtgttttattttattcgtCAGCTGTGTGGTTTAGTAATTTCTGAGATGTCTGCAGATATCCCGGAGATATTCAAGGCCCTGCTCGAGCACCCTTTCTCAGTCCCCTCCTTTATTGACGaaaatgaaaaagataaGCTGTTGGGAGATGATCCAGACAGCGGAGGAGGGGTCAGTGGACTTGGGCCTTCAGCCGCCTTGACCCCTGCAATCTGGGATAAGACTATTCCCTACGATGGTGAGACCTTCCACTTGGAGTACATGGATCTGGAGGAGTTTCTGATAGAGAATGGTATTCCTGCTTCATCTGAAGAAGCCCAGGTAAAAGAGCTGACCAAGGAAAGCTCCCAGCAGACACCTGAGAAGCCAGTTGATGTCATTTCGAAGACAGAGCCAGCCCCAGTCTCTCTGTTGCCAGTCGTAGAACTGGACCAGTGTCAGGAAGAGGTTATCACAACCACTGCATCAAGCACAGACTCAGTAGAGACCAAAACAGACAATGACCGGTTGACGCCGGAGCCTGTTGACCCGGAGGACATTGAGGTGGAAGTGAACTTCGAGCCAGATCCTACAGACCTCGTCCTGTCCAGCGTACCTGGAGGAGAACTGTTCGATCCCCGCAAACATCGCTTTACTGAAGAGGAGCTCAAGCCACAGCCCATGatcaaaaaagcaaagaaaatctTTGTGCCAGAAGAGCAGAAGGATGAGAAATACTGGCAGAGAAGGAAGAAGAACAATATTGCAGCTAAACGTTCACGAGATGCCCGGCGCCTAAAGGAGAATCAGATCACGGTCCGTGCTGCCTTCCTGGAGCGGGAGAACACAGCGCTGAGGCAGGAGGTGTCTGAGCTGCGCAAGGACTTTGGGCGCTGCAAGACTACTTTGTCACGCTATGAAGCCAAATACGGACCACTTGCTCCAGCTGAAGACCAGTAGAATGTTTTACTAACTTTAAGAGATGTTATACATTAAAGGAGCATTCATTCTAAATCCATCACCCAATACATGAGGGCGAAACGTCAGTTTAGGAGAATGTAACTGACCCCTAGCCATTTTGTAGCTGAAAGTAAATCTGATGCAGAAGTTCAAGTTGGGGCAAATTGGAGGTCTTGTAACATGAGCTGTGTCTATTACTGCTCTATTAACTATTCCTTGTCTTGTTTTACACGTTCCCATGTCTTCAATGCATTGTTCAGATGCACTAACATCAATTTTGTGGCACACATTAGGTAACATATGCTTAACTAGCTAGATTCCAGATTCAATCAGTACCACAAAGTAGAAGTTTGATTCTGACTAACTGCTGCGTTACTTATACAACTGACAGAAAGCTAAAATACAAACCGTTTTCTTATGCTAGCTGCTGTGACCATCAAGCTAGGCTAATGCTAGCTTAATTAGCAGGCACAAAAAGCCCACACCACAGTTCAATCCAAACTATAGGGTTCCAGACAAGAGTTAGTGGATAAAGACTCGAAAGAGAGTAAAGTGAATTATTTTTGGAACAGCTACGTGTTATGTGGTGTGTGCGTAGCTCTAAGCCTGTCAGCTATCACTTAGCCCTATTCAGGCACTGGTTTTCTGGTATTTCCTAGCAGCTTAGCTCATAGCTTAATGAATCTGATGCAGAACAGccatataaaaaacattgtttttctacaaggggaaataaaatccttttgttctttttttttttgtaaacgtTAAACACATATACACTGTTCACACCATGCTTGTATTGTCTCTGGTGTTACCCGCAATTGTCCCCAAGGTTAAAAAATTACCACGAACCTTTAGTCAGAAATGTAATACAAAAAATTGGATTTTGAATTGAACACTCTTTCTAATGTGAAAAAGAATGATATTAGAGTGTACTGTGCGGAGAGGAAGATGGTGAAGGGGAAGAACAGACAGGATGCTGGTGAGGAGTGAATTTGTGGTTTACCAGTGATCAGTATCTTGtttaaagttgttttaataTCATGGTTTGCACTAGGTAAAGGCTTTTTTAGTGCAAATAGATAAATGGAGTGAAGTGACCTTTTGCCCTTTCTTGTTCTTATTCTGGGGATACAAGAACATTTGGGACGATTATTACAGAAAAATGGCTTTGTAGCTCGTTGTAcgttctttgtctttttttctacattgtttcTCTGGAGTTTACTTGTTTGTGTATAAATGCAGGGTGTAACACAAATTGTAGATATATAACTGGATATCATTAGACAGAGCATGATCAAAAGTAAACGTGTAAACGTTcctcttgtgttttttgtgctgTGAACAGGTTGTAATTGTCTGTGTGTCCATTTAACATGTATCCAAACCCTGTAGTGTCTTAAGagatttgttttgtgtgttttttttttataacaagtCAGTAACAAcaaaacagttatttttttgtaatcttGCTTCATGTAACTGGTTCCCTCAACCTTGATTAACATCAGGCATTATTTACCCCACCAAATGCAATAGAGGTTAATTCTGCCTCAAAGCCATGTGGTTTGGTCAGAACAGAGCAGAAACTTGATTATGTTATTAAATCAAGGGAGGGTGTAcaacaaaaaatactgtaaatagttCTTTGTGTGTAAATAAGAGTTTATTCTGTTCCAATTCTGAGCTTGTTTTCTGTAACAAtaacacatttcacactgtaaactgagCCTAACTAATACAGCAACCTCATATGTTTAAGGCTCTTGCTGTGTGCATATCAACCCAACAGTTAACCCAACATATAAATATCTGCTTGTTTAcaaaagggcaaaaaaaaaggtatattataaatcattatcttgtattagtgtgtgtgtgtgtgtatgtgtgtgtatatatatatatatatatacacacatacacacatacacacacattagtcTCCCCCATTAGACATGTCTAAAGATCATCACTGTGTGCTTCcaggtttaatatatatatatatataatatatatatatatatatatatatatatatatattatatatatatactacaaacCCATATATCAACAATAATCTCATGATCTcttcatgttttaaatattgtttctgTTCTGTGACAGGCTAAAAGGGATTAAACATTTCTAACCAATGTCTGTTATGTTTTACAGTTCTACAGTAATAACTTTCACTCCTATTTGATGTCGGAGATTAATTTCCAAAAAATTGGAAAATTGTCTTAGATAAGGCGTGGcttaccttttttttctttgagagAGTTTGGTTGAAAATGATTTGTAAAGCATGTTTGATATTTTCAGTAGCTAGCAGTTAGCATTTATGTACATATTTGACTGTTCTACAAGTATTTGGTTTTGGGTATTTTAGAAAGCAGGATTTCTCTGTTAACCAGATAACTTAAGCCTAAACATGAGGTCTGTACTGattcatatataaaaacaaaccttaatataatattgaaataaatttaACATTACATATCACCAAAATTAGAattacaaaaagaagaaaaaatgtatCTGGTTTCAGCTAtttatgaaacatttattaacttAAGACTTAATTTTCTACTTTTTGTATTATCTGAATATGTTGGTTGGCCTGTTTGCCTGTAGTATCCCCCTCATGCTTTTATACAtaggtttgttttaatgtaaaactgtTGATGTAAATCTGTTAAACTGTCCTGATAACCCCCTGTTGTacatattaataaagaaaaagatgtcGACATTAAAAAAA

Function

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50160 lncRNA downstream 82131 17121775 ~ 17122201 (-) True G37217
TU50158 lncRNA downstream 88324 17112502 ~ 17116008 (-) True G37215
TU50155 lncRNA downstream 93623 17108712 ~ 17110709 (-) True G37213
TU50140 lncRNA downstream 112281 17091742 ~ 17092051 (-) True G37206
TU50126 lncRNA downstream 149914 17047607 ~ 17054418 (-) False crym
TU50195 lncRNA upstream 28393 17241176 ~ 17327596 (-) True G37237
TU50196 lncRNA upstream 28937 17241720 ~ 17247453 (-) True G37238
TU50220 lncRNA upstream 122808 17335591 ~ 17337322 (-) True G37254
TU50244 lncRNA upstream 173058 17385841 ~ 17390421 (-) True G37274
TU50286 lncRNA upstream 261127 17473910 ~ 17476836 (-) True LOC103025140
XM_007251274.3 mRNA downstream 5495 17187667 ~ 17198837 (-) True LOC103029821
XM_007251275.3 mRNA downstream 19905 17179347 ~ 17184427 (-) True LOC103030148
XM_007251319.2 mRNA downstream 34454 17148541 ~ 17169878 (-) True LOC103043322
XM_007251285.3 mRNA downstream 136350 17065403 ~ 17067982 (-) True LOC103032763
XM_015606335.2 mRNA downstream 141385 17053529 ~ 17062947 (-) False crym
XM_022669437.1 mRNA upstream 813 17213596 ~ 17232139 (-) True LOC103028243
XM_007251265.3 mRNA upstream 60590 17273373 ~ 17288832 (-) True LOC103027309
XM_007251259.3 mRNA upstream 106423 17319206 ~ 17325915 (-) False LOC103025298
XM_007251258.3 mRNA upstream 106423 17319206 ~ 17325744 (-) False LOC103025298
XM_022669222.1 mRNA upstream 106423 17319206 ~ 17325590 (-) False LOC103025298
TU50180 other downstream 19927 17179378 ~ 17184405 (-) False LOC103030148
trnal-uag_1 other downstream 109006 17095245 ~ 17095326 (-) True trnal-uag_1
TU50113 other downstream 185414 17016128 ~ 17018918 (-) True G37183
TU49443 other downstream 1363847 15837105 ~ 15840485 (-) False LOC103023526
XR_002649883.1 other downstream 1445469 15758390 ~ 15758863 (-) True LOC111192378
TU50205 other upstream 161401 17374184 ~ 17381597 (-) True LOC103024241
TU50265 other upstream 220189 17432972 ~ 17466024 (-) True G37290
TU50267 other upstream 220189 17432972 ~ 17463317 (-) False G37290
TU50318 other upstream 371267 17584050 ~ 17653785 (-) False LOC103025753
XR_002649888.1 other upstream 479714 17692497 ~ 17705023 (-) False cntd1

Expression Profile